LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi800g00020	ATGCGTTGGTCTTCCTTCTATCACACAGCCTCAAGGGTTTTTCATGAATATCCATCCTTGTCCAAGTCTGTTGTTATATGCACTGTCATCAGTGGTGGAGGTCTTGTAGCATATAGTGATGCAGGACCAGCTCAGAGTGATCAAAACAGGAAAAAGAAGGTGGTGGTGCTTGGAACTGGTTGGGCTGGAACCAGTTTTTTGAAAAGCATGAAAAACTCCTCCTATGATATTCATGTAGTTTCACCACGCAACTATTTTGCATTCACTCCTTTGCTACCAAGTGTCACGTGTGGCACAGTGGAGGCACGGAGCATTGTTGAACCCATTCGCACTATCTCCCGAAAGAGTGGTGCAAATATTCAATTCAGTGAAGCTGAATGCTATAAGATTGATCCCAAGAACAATAAAGTTTACTGCCATGCTGCTCAAAACAAGAAGCTTGGTGGCTTAGAAGATTTTTCCATTGATTATGATTACTTGATCATAGCTATGGGAGCACGTCCTAATACATTCAACACACCTGTGGAAGATGGTCTAAGAATCCGGCGAGAAGTGATTAACCTCTTTGAAAGAGCTAGCCTTCCTTCTTTACCAGTGGAAGAGAAGAAAAAACTTCTCAGTTTTGTAATTGTTGGTGGTGGTCCAACTGGGGTAGAGTTTGCTGCAGAGCTTCATGATTTTGTACATGAGGATCTACATAAATTATATCCTTCCCTTGTAGAACATGTCAAGATTATTCTCCTTGAGGCAGGAGATCATATCTTAAACATGTTTGACAAGAGAATTACAGAATTTGCTGAAAAAAAGTTCAAAAGAGATGGCATTGATGTGAGGTTGGGATCTATGGTTGTCAAAGTTGGTGAAAATGAAATCACTGCCAAAGAAAGAGGAACTGGTCAAGTTGTAAGTATTCCTCATGGAATGGTAGTTTGGTCAACTGGTGTTGGTGCTCGCCCTGAAATACTTGAATTTATGAAGCAGATTGGTCAGGTTAACAGGCGTGCATTAGTCACTGATGAATGGTTAAGGGTGGAAGGATGTGACAACATCTATGCTCTAGGTGATTGTGCCACTATAAATCAGCGTAAAGTTATGGAAGATATAGCTGTGATATTTAGCAAGGCAGACAAGAACAATTCAGGAAGGTTAGATCTTAAAGAATTTCATCACGTTGTTGATGACATTATTGAGAGGTACCCACAGGTGGATATTTATTTAAAGAAGAACCAAATGAAGGATATGGCCACCTTGCTAAACCAATCTCAGGAAACCTCTGCTATGGTTGACATTGAATACTTTAAAGAAGCTCTTTCCAAAGTAGATTCTCAGATGAAAAATCTCCCTGCAACAGCTCAGGTAGCTGCTCAACAAGGCACCTATCTTGCTGACTGTTTCAATCGGATGGAGTTGTGTGAGAGGTATCCTGAAGGCCCTCTCAGGTTTAGGGGAACAGGACGCCATCGGTTTCGCCCCTTCAGGTACAAGCATTTTGGACAATTTGCTCCTCTAGGAGGAGAACAAACTGCAGCTCAGCTTCCAGGAGATTGGATTTCCATTGGTCATAGCACACAGTGGCTCTGGTATTCTATATACACAAGCAAACTGGTCAGCTGGAGAACAAGGGCTTTGGTGGTATCTGACTGGACAAGGCGATTCATATTTGGTAGGGACTCAAGTCAAATCTGA	1686	0.4199	MRWSSFYHTASRVFHEYPSLSKSVVICTVISGGGLVAYSDAGPAQSDQNRKKKVVVLGTGWAGTSFLKSMKNSSYDIHVVSPRNYFAFTPLLPSVTCGTVEARSIVEPIRTISRKSGANIQFSEAECYKIDPKNNKVYCHAAQNKKLGGLEDFSIDYDYLIIAMGARPNTFNTPVEDGLRIRREVINLFERASLPSLPVEEKKKLLSFVIVGGGPTGVEFAAELHDFVHEDLHKLYPSLVEHVKIILLEAGDHILNMFDKRITEFAEKKFKRDGIDVRLGSMVVKVGENEITAKERGTGQVVSIPHGMVVWSTGVGARPEILEFMKQIGQVNRRALVTDEWLRVEGCDNIYALGDCATINQRKVMEDIAVIFSKADKNNSGRLDLKEFHHVVDDIIERYPQVDIYLKKNQMKDMATLLNQSQETSAMVDIEYFKEALSKVDSQMKNLPATAQVAAQQGTYLADCFNRMELCERYPEGPLRFRGTGRHRFRPFRYKHFGQFAPLGGEQTAAQLPGDWISIGHSTQWLWYSIYTSKLVSWRTRALVVSDWTRRFIFGRDSSQI	561

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi800g00020	561	Gene3D	-	43	413	-	-
	Sebi800g00020	561	PANTHER	NADH DEHYDROGENASE	44	561	IPR045024	GO:0003954\|GO:0006116
	Sebi800g00020	561	FunFam	External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial	43	392	-	-
	Sebi800g00020	561	Gene3D	-	434	554	-	-
	Sebi800g00020	561	Pfam	Pyridine nucleotide-disulphide oxidoreductase	52	365	IPR023753	GO:0016491
	Sebi800g00020	561	ProSiteProfiles	EF-hand calcium-binding domain profile.	363	398	IPR002048	GO:0005509
	Sebi800g00020	561	SMART	efh_1	367	395	IPR002048	GO:0005509
	Sebi800g00020	561	ProSitePatterns	EF-hand calcium-binding domain.	376	388	IPR018247	-
	Sebi800g00020	561	PRINTS	Pyridine nucleotide disulphide reductase class-II signature	158	166	-	-
	Sebi800g00020	561	PRINTS	Pyridine nucleotide disulphide reductase class-II signature	53	75	-	-
	Sebi800g00020	561	PRINTS	Pyridine nucleotide disulphide reductase class-II signature	345	363	-	-
	Sebi800g00020	561	PRINTS	Pyridine nucleotide disulphide reductase class-II signature	203	227	-	-
	Sebi800g00020	561	SUPERFAMILY	EF-hand	357	447	IPR011992	-
	Sebi800g00020	561	SUPERFAMILY	FAD/NAD(P)-binding domain	49	359	IPR036188	-
	Sebi800g00020	561	PRINTS	FAD-dependent pyridine nucleotide reductase signature	335	357	-	-
	Sebi800g00020	561	PRINTS	FAD-dependent pyridine nucleotide reductase signature	54	73	-	-
	Sebi800g00020	561	PRINTS	FAD-dependent pyridine nucleotide reductase signature	157	175	-	-
	Sebi800g00020	561	PRINTS	FAD-dependent pyridine nucleotide reductase signature	207	225	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi800g00020	Sebi-Chr800	336595	340775	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi800g00020	1	561	Chloroplast and Mitochondria Gene Families	AT4G21490	66.838	0.0	785

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi800g00020	K03885		-	gmx:100820044	976.081