Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi7g00143 ATGATGAAAGGAACAGAGAAGTTTTACCGTCAAGGACCATATAATGGCCTACATCTTAGTGGAGTACCAGCACAACAACCCATCGACTCCTTTTTGAATTCCGAGATTGTCAAGAACAAGGATGAGATCTACTACGCATATAGCCTCAAGAACAATTCTGTCATCTCATATATGGTATTAAACCAAACCACTCTTGTTCAGTATGTGTGGCATGAAGAATATCATGATTGGAAGACTTATTATTCAGTCCCCAGAGACAATTGTGACAAGTATGGCCTTTGTGGAGCCTATGGAAATTGCATGATTTCTCAAGGACAGGTCTGCCAATGTTTGAATGGGTTCAGTCCAAAGTCACCACAAGCATGGATCACATCGGACTGGAGTCAAGGATGTGTCCGTGATGAACCGTTAAGCAGCTGCAATGACACACACAAGGATGGGTTTGTCAAATTTGAAGGCCTCAAAGTTCCAGATACAACACATACCTGGTTAGATGAAAGTTTGGGTCTAGAGGAATGCAGAGACAAGTGCTTGAATAATTGCTCTTGTATGGCTTATGCAAATTCAAACATCAGTGGAGCAGGTAGTGGCTGTGTCATGTGGTTCGGCGATCTAATTGACATGAGACAATTTGAAGATGGTGGTCAAGTTCTTTATATCCGTATGGTAGCTGGTCCAGAATTAGTCAACCATGAACACCCTGCAGATAGCCACGACAAAAGGGTGACAAAAATAATTGCTACTACCGTTGCTGCAATTTCTGGGGTGCTTATATTTTGCATTTATATCATATACAGAGTCCAAAGAAAAATTGCAGATAACAACATTGAAATACATCTAGATGAACTGGATTTGCCATTATTCGATCTGCTAACAATTACTACTGCCACTCACAACTTCTCGTTGAATAATAAAATTGGACAAGGTGGTTTTGGACCTGTATACAAGGGGAAATTAGCGGATGGGCAAGAAATTGCTGTTAAGAGACTTTCAAGTAGTTCCGGACAAGGAATTTCTGAGTTCTTTACAGAAGTCAAACTAATTGCAAAACTTCAACACAGAAATCTTGTAAAGCTTCTTGGTTGTTGTATTCGAGGAGAAGAAAAATTGCTAGTATATGAATTTATGGCTAATGGTAGCCTTGACTCCTTTATTTTTGATTTTGGAATGGCTAGATCTTGTGGAGGAGACCAAATTGAAGGAAACACAAATAAAATTGTTGGGACTTATGGATACATGGCACCAGAGTATGCTGTTGATGGGCTATTTTCAATAAAATCTGATGTTTTCAGCTTTGGTATTTTATTGTTGGAGATTATATGTGGGAACAAAAATAGAGCTCTTTGTCATAGAAACCAGACTCTTAACCTTGTTGGTTATGCATGGACACTTTGGAAGGAGGGAAACGCTTTACAGTTGATTGACTCAAGAATAAAGAACTCATGTGTTGTCTCAGAGGTATTGCAATGCATCCATGTTAGTCTCTTATGCGTGCAGCAATATCCGGAGGATAGACCAACCATGACCTCAGTAGTACAAATGTTAGGTAGTGAAAATGAACTAATTGAGCCCAAAGAGCCTGGGTTCTTCCCAAGGAGTATTTCTAATGGAGGAAATCCAAGCTCAAATCAAAATGAAATGAGTACAAATGATGAATTAACCATTACCTCATTAAATGGCCGATGA 1686 0.3926 MMKGTEKFYRQGPYNGLHLSGVPAQQPIDSFLNSEIVKNKDEIYYAYSLKNNSVISYMVLNQTTLVQYVWHEEYHDWKTYYSVPRDNCDKYGLCGAYGNCMISQGQVCQCLNGFSPKSPQAWITSDWSQGCVRDEPLSSCNDTHKDGFVKFEGLKVPDTTHTWLDESLGLEECRDKCLNNCSCMAYANSNISGAGSGCVMWFGDLIDMRQFEDGGQVLYIRMVAGPELVNHEHPADSHDKRVTKIIATTVAAISGVLIFCIYIIYRVQRKIADNNIEIHLDELDLPLFDLLTITTATHNFSLNNKIGQGGFGPVYKGKLADGQEIAVKRLSSSSGQGISEFFTEVKLIAKLQHRNLVKLLGCCIRGEEKLLVYEFMANGSLDSFIFDFGMARSCGGDQIEGNTNKIVGTYGYMAPEYAVDGLFSIKSDVFSFGILLLEIICGNKNRALCHRNQTLNLVGYAWTLWKEGNALQLIDSRIKNSCVVSEVLQCIHVSLLCVQQYPEDRPTMTSVVQMLGSENELIEPKEPGFFPRSISNGGNPSSNQNEMSTNDELTITSLNGR 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi7g00143 561 Pfam S-locus glycoprotein domain 9 118 IPR000858 GO:0048544
Sebi7g00143 561 ProSiteProfiles Protein kinase domain profile. 300 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi7g00143 561 Pfam Protein tyrosine and serine/threonine kinase 301 385 IPR001245 GO:0004672|GO:0006468
Sebi7g00143 561 SMART ntp_6 143 222 IPR003609 -
Sebi7g00143 561 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 396 520 - -
Sebi7g00143 561 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 4 506 - -
Sebi7g00143 561 MobiDBLite consensus disorder prediction 532 561 - -
Sebi7g00143 561 FunFam receptor-like serine/threonine-protein kinase SD1-8 272 375 - -
Sebi7g00143 561 CDD PAN_AP_plant 138 221 - -
Sebi7g00143 561 ProSiteProfiles PAN/Apple domain profile. 140 224 IPR003609 -
Sebi7g00143 561 Gene3D Phosphorylase Kinase; domain 1 264 371 - -
Sebi7g00143 561 MobiDBLite consensus disorder prediction 534 561 - -
Sebi7g00143 561 Pfam PAN-like domain 140 208 IPR003609 -
Sebi7g00143 561 Gene3D Transferase(Phosphotransferase) domain 1 372 522 - -
Sebi7g00143 561 SUPERFAMILY Protein kinase-like (PK-like) 285 533 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi7g00143 Sebi-Chr7 3380621 3383384 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi7g00143 230 533 Receptor kinase-like Gene Family AT4G23190 36.216 8.04e-71 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi7g00143 S_locus_glycop 2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi7g00143 - - gmx:100812007 735.717