Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi7g00123 ATGGCGATGAGGGCGGCGGCGGCGCCCCGCGGTTTGCGGCGGCTTTTCTGCACCAACTCAACCTCTTCTTCTCCTTCTTTCCCTTTCGTTCCAACGCCGCCTTCGGGAACGGCTCCCACTCGACAGATGGCGGAGCCCAGCACCAACCTCTTCGTCTCTGGGCTCAGCAAACGTACTACAACAGAAAGGCTACAGGAAGAATTTTCAAAGTTTGGTCAAGTTGTTCATGCTAGGGTGGTAACTGATCGAGTGTCAGGTTACTCTAAGGGGTTTGGATTTGTGAAATATGCTACTATAGAAGAGGCTGCTAAGGGCATTGAAGGGATGGATGGCAAGTTTTTGGATGGTTGGGTTATATTTGCAGAGTATGCAAGACCAAGACCACCACCGGGACAACAACCTGTGATGTTTGGACTGGTGTTGCTTGGATCTGATGCCCCCTACTCGAAACGAGTTATAATGGTTCTTGTCTATGAATGTCTCCCTGAGTATGGAGAGGATTCTGCCCCAGGTGAGGTGAGGACAAGTGTCAACTTGGAAAAAGTTCGAATAAGCGTCTCTCACTTGGATCATCCAAATAGGATGGTTGCCAGATCGGATCCGGGTTGCCCTCGGAATAGGTCGAATAGTGAAGGCGTGGGTATTTTAAAAACCAGTAAAGAGCAGGGACATGTATACCGGCAACACGAACGAACAAAAAGGGGTTACGGTCACCGAGGAAGGAATTTCCCAGCCAAGACAGATTGGGTCGACCATCAACGTTCGGAACCTGTAGGCAATTACGGGTTAGCAGCGATGACGCCCCTAAATACGACCAGAGCCCGGATTTTGAAGGAGGTGTATCAGTCCAACCTCATCAGGCTACCACCACAGGCAGAGGGACCCAAAGGACCGGATATGAACAAATGGTGTGACTACCATCGAGCAAAGGGGCATGACACAGAGAATTGCTGGACATTGATGAACATGATCGAAAGACTCATCAAGGAGGGCTATTTGGGGAGGTACGTCGAGAAAAGGAGAGATAGGGGAGATAAGGACCGCAGAAGAGACGAGGAAGGTTCGGGGTCGAAGAGGCGCAGAAATGATCGGCACAAGGAGGGAAGAGGTAAAGAGGAAGTTAGAGGAGTGGTAACCACTATCGCTGGTGGGTTTACCGGGGGTGGAGAAACCGGTTCGTCCAGAAGGAGGTATGCCAGGCAGAGCTCGACCCCCGGGAAGACTTCTTCGAGAGGAGACCACAACCAACTGAAGAATTGGAGGAAGTACAGATAG 1275 0.5098 MAMRAAAAPRGLRRLFCTNSTSSSPSFPFVPTPPSGTAPTRQMAEPSTNLFVSGLSKRTTTERLQEEFSKFGQVVHARVVTDRVSGYSKGFGFVKYATIEEAAKGIEGMDGKFLDGWVIFAEYARPRPPPGQQPVMFGLVLLGSDAPYSKRVIMVLVYECLPEYGEDSAPGEVRTSVNLEKVRISVSHLDHPNRMVARSDPGCPRNRSNSEGVGILKTSKEQGHVYRQHERTKRGYGHRGRNFPAKTDWVDHQRSEPVGNYGLAAMTPLNTTRARILKEVYQSNLIRLPPQAEGPKGPDMNKWCDYHRAKGHDTENCWTLMNMIERLIKEGYLGRYVEKRRDRGDKDRRRDEEGSGSKRRRNDRHKEGRGKEEVRGVVTTIAGGFTGGGETGSSRRRYARQSSTPGKTSSRGDHNQLKNWRKYR 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi7g00123 424 Gene3D - 22 133 IPR012677 -
Sebi7g00123 424 MobiDBLite consensus disorder prediction 340 374 - -
Sebi7g00123 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 116 IPR000504 GO:0003723
Sebi7g00123 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 126 IPR000504 GO:0003723
Sebi7g00123 424 SUPERFAMILY RNA-binding domain, RBD 27 133 IPR035979 GO:0003676
Sebi7g00123 424 SMART rrm1_1 49 122 IPR000504 GO:0003723
Sebi7g00123 424 MobiDBLite consensus disorder prediction 395 413 - -
Sebi7g00123 424 FunFam RNA recognition motif-containing protein 29 137 - -
Sebi7g00123 424 MobiDBLite consensus disorder prediction 340 424 - -
Sebi7g00123 424 PANTHER NUCLEOLAR PROTEIN 8 31 129 - -
Sebi7g00123 424 MobiDBLite consensus disorder prediction 193 212 - -
Sebi7g00123 424 MobiDBLite consensus disorder prediction 21 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi7g00123 Sebi-Chr7 2650315 2660351 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi7g00123 49 140 Eukaryotic Initiation Factors Gene Family AT1G34140 32.710 1.98e-10 60.5