Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi7g00050 ATGCAGATCTTCGTGAAAACATTAACAGGGAAGACCGTCACCCTTGAGGTGGAAAGTTCAGATACCATTGACAACGTGAAAGCAAAGATCCAAGACAAGGAAGGGATCCCACCTGATCAACAAAGGCTCATCTTTGCCGGTAAACAATTGGAGGATGGTCGCACCCTTGCCGATTACAACATCCAAAAGGAGTCAACCCTTCACCTCGTGCTCCGCCTCAGGGGTGGCATGCAAATCTTTGTCAAGACCTTGACTGGGAAAACCATCACTCTTGAGGTTGAATCCTCCGATACCATTGATAATGTAAAGGCTAAGATTCAGGACAAAGAGGGTATCCCTCCGGATCAACAGAGGTTGATTTTTGCTGGGAAACAACTTGAGGATGGAAGAACCCTTGCTGATTATAACATCCAGAAGGAGTCCACCCTTCATTTGGTGCTTCGATTGAGAGGTGGCATGCAAATTTTCGTCAAGACTTTGACAGGAAAGACTATAACTTTAGAGGTAGAATCCTCAGATACCATAGATAATGTGAAAGCCAAGATTCAGGACAAGGAAGGTATCCCTCCAGACCAGCAGAGGCTTATCTTTGCTGGGAAGCAGCTTGAAGATGGAAGAACGCTTGCTGATTATAACATTCAGAAGGAGTCCACTCTGCACTTGGTTTTGCGGCTTCGTGGTGGAAAGCTCTGA 693 0.4589 MQIFVKTLTGKTVTLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGKL 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi7g00050 230 FunFam Polyubiquitin 3 153 228 - -
Sebi7g00050 230 PRINTS Ubiquitin signature 87 107 IPR019956 -
Sebi7g00050 230 PRINTS Ubiquitin signature 108 128 IPR019956 -
Sebi7g00050 230 PRINTS Ubiquitin signature 129 150 IPR019956 -
Sebi7g00050 230 PANTHER UBIQUITIN 77 154 - -
Sebi7g00050 230 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Sebi7g00050 230 Pfam Ubiquitin family 155 226 IPR000626 GO:0005515
Sebi7g00050 230 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Sebi7g00050 230 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Sebi7g00050 230 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Sebi7g00050 230 Gene3D - 153 230 - -
Sebi7g00050 230 Gene3D - 1 76 - -
Sebi7g00050 230 Gene3D - 77 152 - -
Sebi7g00050 230 SUPERFAMILY Ubiquitin-like 152 229 IPR029071 -
Sebi7g00050 230 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Sebi7g00050 230 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Sebi7g00050 230 SMART ubq_7 77 148 IPR000626 GO:0005515
Sebi7g00050 230 SMART ubq_7 153 224 IPR000626 GO:0005515
Sebi7g00050 230 SMART ubq_7 1 72 IPR000626 GO:0005515
Sebi7g00050 230 CDD Ubl_ubiquitin 1 76 - -
Sebi7g00050 230 CDD Ubl_ubiquitin 77 152 - -
Sebi7g00050 230 CDD Ubl_ubiquitin 153 228 - -
Sebi7g00050 230 ProSitePatterns Ubiquitin domain signature. 179 204 IPR019954 -
Sebi7g00050 230 ProSiteProfiles Ubiquitin domain profile. 153 228 IPR000626 GO:0005515
Sebi7g00050 230 FunFam Polyubiquitin 3 77 152 - -
Sebi7g00050 230 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Sebi7g00050 230 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Sebi7g00050 230 FunFam Polyubiquitin 3 1 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi7g00050 Sebi-Chr7 1097265 1097957 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi7g00050 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 97.403 2.43e-49 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi7g00050 K08770 - ncol:116253009 444.121