Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi7g00039 ATGATGTCAAGATCGTATACCAACCTTTTAGATTTGGCTTCCGGGAATTTCCCGGCAATGGGGAGGGAGTCTAAGGAAAGAAGGAGGATGCCAAGGGTTATGAGTGTACCTGGGTTTGTCACAGAGGTGGATGATGACCAGGCACTTAAGGATGGATTTCCAGAAGATATGGAGGTTCTTTATGTTGGATCTTTGCGCGTTGACATTGATCCGGCTGAACAGGATGACGTATCACATTATGGCCACTTTTTCATTACATGTTACCCTTCTCGACTGATAAAAGCCACCGTTTTGATCGCACTTTGTGGGAAGCCTATGTGCTGGCAAATAAACTATTCTTTCAAAAGGGTTAAAATGGGATTTTTCCTGCATAGCCCCTTTCCGTCCTCAGAGATATATAGGACCCTTCCTGTGAGGGAAGAGATACTGAAAGCTTTACTAAACTCTGATATCATTGGATTCCATACCTTTGACTATGCCCGTCATTTCCTTTCCTGTTGCAGTCGAATGTTGGGTCTTGAGTATCAGTCAAAGAGGGGCTATCTAGGATTGGAATATTATGGAAGGACTATCAGTATTAAGATCATGCCTGTTGGGATTCACATGGGTCGTATTGAATCGGTTATGAGAACGGCAGATGAGGAGTGTAAGGTAAGGGAGCTCAAACAGCAATTCGAAGGAAAAACCATCTTGCTTGGTGTTGATGATATGGACATTTTTAAAGGCATAAATCTGAAGATTTTGGCGATGGAGCAGATGCTCAGACAACACCCCAAATGGCAAGGAAGAGCTGTTCTGGTCCAGATAGTAAATCCTGCAAGAGGTAAAGGGATACATCTAGAGGAGATACGTGCTGAAATACAAGAAAGCTGCAACAGGATCAACAGAGTGTTTGGACGACCTGGTTATGAACCTATTGTTTTTATTGATAGATCAGTTCCATTTACTGAAAAAGTTGCCTATTACAGCATTGCTGAGTGTGTTATTGTCACAGCTGTAAGGGATGGGATGAACCTAACTCCTTATGAATATATTGCTTGTCGACAAGGAATATCTGGTTCTGAATCATGTTCCAATGTCAGTGACCCAAAAAAGAGCATGCTAGTAATATCAGAATTTATTGGCTGTTCTCCATCTCTTAGTGGGGCTATCCGTGTCAATCCATGGAATGTTGAAGCAACCGCAGAGGCAATGAATGAGGCCATCTCAATGGGTGATGGAGAGAAACAGTTGCGGCATGAAAACATTACCGGTCTTAGCTTTGGATTTAGAGTTGTGGCACTTGACCCTAACTTTAAAAAGCTTTCAATTGATGCTATGGTTTCAGCTTACAAGAGGGCAAGGAGTAGGGCCATTTTATTGGACTATGATGGTACTGTGATGCCACAGAACTCCATTAATAAGAGTCCAAGCAAGGAGGTCATCTCTATTTTAAAAACACTCTGTGCTGACTCCAGAAATGTAGTTTTCATTGTTAGTGGACGGGGGAGGGATAGCTTAAGTGAATGGTTTATTCCCTGCAAAAAACTTGGAATTGCTGCAGAACATGGGTATTTCATGAGATGGTCCCAGAGTGAAGAATGGGAAATTTGTGGTAAGTGCTCCGAATTTGGATGGATGCAGATTGCTGAACCTGTAATGAGACTATATACAGAGGCAACTGATGGTTCCTCCATTGAACGTAAGGAAAGTGCTTTGGTTTGGCAATACCGGGATGCAGACCTTGGTTTTGGATCTGCTCAGGCTAAGGAAATGTTAGATCATCTAGAAAGTGTTTTGGCCAATGAGCCTGTTGCTGCAAAGAGTGGCCAGTTTATTGTTGAAGTGAAGCCCCAGGATGTGAGCAAAGGCTTAGTTGCTGAAAAGATATTTTCGTCAATGGCTGAGAATGGCAATCAGGCTGACTTTGTGCTGTGTGTTGGTGATGACAGATCAGATGAGGACATGTTTGAAATAGTTAGCAGTGCAATCTCGAGAAATATTCTTTCCACCAATGCTTCTGTATTTGCTTGCACGGTTGGTCAAAAACCTAGCAAAGCTAAGTATTATCTGGATGATACAACTGAAGTAACAAGCATGCTAGAATCATTGGCCGAAGAATCAGATTCTTCACCCTGCATAGAAGAAAGTGGGGATTCCTCTTGA 2145 0.4247 MMSRSYTNLLDLASGNFPAMGRESKERRRMPRVMSVPGFVTEVDDDQALKDGFPEDMEVLYVGSLRVDIDPAEQDDVSHYGHFFITCYPSRLIKATVLIALCGKPMCWQINYSFKRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTISIKIMPVGIHMGRIESVMRTADEECKVRELKQQFEGKTILLGVDDMDIFKGINLKILAMEQMLRQHPKWQGRAVLVQIVNPARGKGIHLEEIRAEIQESCNRINRVFGRPGYEPIVFIDRSVPFTEKVAYYSIAECVIVTAVRDGMNLTPYEYIACRQGISGSESCSNVSDPKKSMLVISEFIGCSPSLSGAIRVNPWNVEATAEAMNEAISMGDGEKQLRHENITGLSFGFRVVALDPNFKKLSIDAMVSAYKRARSRAILLDYDGTVMPQNSINKSPSKEVISILKTLCADSRNVVFIVSGRGRDSLSEWFIPCKKLGIAAEHGYFMRWSQSEEWEICGKCSEFGWMQIAEPVMRLYTEATDGSSIERKESALVWQYRDADLGFGSAQAKEMLDHLESVLANEPVAAKSGQFIVEVKPQDVSKGLVAEKIFSSMAENGNQADFVLCVGDDRSDEDMFEIVSSAISRNILSTNASVFACTVGQKPSKAKYYLDDTTEVTSMLESLAEESDSSPCIEESGDSS 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi7g00039 714 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 55 416 - -
Sebi7g00039 714 FunFam Alpha,alpha-trehalose-phosphate synthase 208 418 - -
Sebi7g00039 714 Pfam Trehalose-phosphatase 453 687 IPR003337 GO:0003824|GO:0005992
Sebi7g00039 714 Pfam Glycosyltransferase family 20 112 415 IPR001830 GO:0003824|GO:0005992
Sebi7g00039 714 NCBIfam HAD-IIB family hydrolase 452 656 IPR006379 -
Sebi7g00039 714 Gene3D Glycogen Phosphorylase B; 208 418 - -
Sebi7g00039 714 CDD GT20_TPS 114 415 IPR001830 GO:0003824|GO:0005992
Sebi7g00039 714 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 579 710 - -
Sebi7g00039 714 MobiDBLite consensus disorder prediction 695 714 - -
Sebi7g00039 714 Gene3D Glycogen Phosphorylase B; 105 207 - -
Sebi7g00039 714 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 113 416 IPR001830 GO:0003824|GO:0005992
Sebi7g00039 714 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 449 566 - -
Sebi7g00039 714 Gene3D - 449 548 IPR023214 -
Sebi7g00039 714 Gene3D - 578 707 IPR023214 -
Sebi7g00039 714 NCBIfam trehalose-phosphatase 447 698 IPR003337 GO:0003824|GO:0005992
Sebi7g00039 714 SUPERFAMILY HAD-like 450 698 IPR036412 -
Sebi7g00039 714 CDD HAD_TPP 451 690 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi7g00039 Sebi-Chr7 806219 810279 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi7g00039 1 90 Trehalose Biosynthesis Gene Families AT1G06410 45.588 1.23e-23 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi7g00039 K16055 - gmx:100800847 1095.88