Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi79g00048 ATGTTGTGTGTTGCTTGTGGGTGTCACCAAAACTTTCACCGCATACACATTGTTTACAACCCCATAGCCTTACCTCAAGTAACAGACAACAATATGAATGCAACAAGGTCGTCACTTGTGGGCCCAATTGTGCAATTCCACCCCTCAGGCTCAAAGCCACCAATGAAGAAGCGGAGGACAAGGTTCACATCGGAGCAAAGGAATCAATTGATGACTTTTGCTAAGGGGTTTGGGTGGAAACCTCAAATGGCAAACAAGGAAGAAATCCAATGTTTCTGCTCAGAGATGGGAATCACTCACAAAATATTAATGGTTTGGCTCAACAACAACCGTCATCAAGCAACACACAAGAATTAA 357 0.4342 MLCVACGCHQNFHRIHIVYNPIALPQVTDNNMNATRSSLVGPIVQFHPSGSKPPMKKRRTRFTSEQRNQLMTFAKGFGWKPQMANKEEIQCFCSEMGITHKILMVWLNNNRHQATHKN 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi79g00048 118 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 2 113 - -
Sebi79g00048 118 NCBIfam homeobox domain, ZF-HD class 56 111 IPR006455 -
Sebi79g00048 118 Gene3D - 45 116 - -
Sebi79g00048 118 SUPERFAMILY Homeodomain-like 48 113 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi79g00048 Sebi-Chr79 1979311 1979667 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi79g00048 1 112 ZF-HD Transcription Factor Family AT5G65410 32.143 1.52e-17 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Sebi79g00048 ZF-HD_dimer 0.00014 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi79g00048 - - gmx:102668663 110.153