Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi79g00047 ATGTCTAGTATTGACGTAAATTTGTCTGGGATAGTGTTTGAGCAAAAGGTGGTCTACAAGGAGTGTAGGCACAACCTTGCAGCAAAACACGGTCTTGTTTTCCATGACGGATGCCTAGAGTTTGTCAAAGACACCACCAATAATGCTATGTTGTGTGTTGCTTGTGGGTGTCACCAAAACTTTCACCGCAGACACATTGTTTACGACCCCATAGCCTTACCTCAAGTAATAGACAACAATATGAATGCAACAAGGTCATCACTTGTGGCCCCAATTGTGCAATTCCACCCCTCAAAGCTCAAAGTCACCAATGAAGAAGCGGAGGACAAGGTTCACATCGGAGCAAAGGAATCAATTGATGACTTTTGTTAA 372 0.4328 MSSIDVNLSGIVFEQKVVYKECRHNLAAKHGLVFHDGCLEFVKDTTNNAMLCVACGCHQNFHRRHIVYDPIALPQVIDNNMNATRSSLVAPIVQFHPSKLKVTNEEAEDKVHIGAKESIDDFC 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi79g00047 123 Pfam ZF-HD protein dimerisation region 17 66 IPR006456 -
Sebi79g00047 123 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 19 65 IPR006456 -
Sebi79g00047 123 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 19 65 IPR006456 -
Sebi79g00047 123 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 15 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi79g00047 Sebi-Chr79 1931661 1932032 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi79g00047 17 66 Zinc finger-homeobox gene family AT1G18835 50.000 6.95e-12 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Sebi79g00047 ZF-HD_dimer 3.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi79g00047 - - pcin:129295411 85.5001