Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi79g00041 ATGTCTAGTATTGACGTAAATTTGTCTGGGATAGTGTTTGAGCAAAAGGTGGTCTACAAGGAGTGTAGGCACAACCTTGCAGCAAAACACGGTCTTGTTTTCCATGATGGATGCCTAGAGTTTGTCAAAGACACTACCAATGATGCTATGTTATGTGTTGCTTGTGGGTGTCACCAAAACTTTCACCGCAGACACATTGTTTACAACCCCACAACCTTACCTCATGTAACAAACAACAATATGAATGCAACAAGGTCATCACTTGTGGGCCCAATTGTACAATTCCACCCCTCAGGCTCAAAGCCACCAATGAAGAAGCGGAGGACAAGGTTCACATCGGAGCAAAGGAATCAATTGATGACTTTTGCTGAGGGGTTTGGGTGGAAACCTCAAATGGCAAACAAGGAAGAAATCCAGCGTTTCTGTTCAGAGATGGGAATCACTCACAAAATATTAATGGTTTGGCTCAACAACAACCGTCATCGAGCAACACACAAGAATTAA 504 0.4306 MSSIDVNLSGIVFEQKVVYKECRHNLAAKHGLVFHDGCLEFVKDTTNDAMLCVACGCHQNFHRRHIVYNPTTLPHVTNNNMNATRSSLVGPIVQFHPSGSKPPMKKRRTRFTSEQRNQLMTFAEGFGWKPQMANKEEIQRFCSEMGITHKILMVWLNNNRHRATHKN 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi79g00041 167 ProSiteProfiles 'Homeobox' domain profile. 102 166 IPR001356 GO:0003677
Sebi79g00041 167 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 15 162 - -
Sebi79g00041 167 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 19 65 IPR006456 -
Sebi79g00041 167 Gene3D - 95 165 - -
Sebi79g00041 167 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 19 65 IPR006456 -
Sebi79g00041 167 SUPERFAMILY Homeodomain-like 97 163 IPR009057 -
Sebi79g00041 167 Pfam ZF-HD protein dimerisation region 17 66 IPR006456 -
Sebi79g00041 167 NCBIfam homeobox domain, ZF-HD class 105 160 IPR006455 -
Sebi79g00041 167 CDD homeodomain 105 162 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi79g00041 Sebi-Chr79 1736552 1737055 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi79g00041 16 160 ZF-HD Transcription Factor Family AT4G24660 32.738 7.85e-27 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Sebi79g00041 ZF-HD_dimer 4.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi79g00041 - - gmx:102668663 145.591