Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi79g00020 ATGGCTCCCAAAAGAGGTGGAAAAGCTCCAGTTCCAGCTTCCAAGAAGAAGCCTGAGAAAGTTACGAACCCATTGTTCGAGAAGCGTCCGAAGCAGTTCGGAATCGGAGGTGCATTGCCTCCAAAGAGAGACCTGACCCGATTCGTGAAGTGGCCTAAGACTGTCCAGCTTCAGAGGAAGAAGAGGATTCTCAAGCAGAGGCTGAAGGTTCCCCCAGCTTTGAACCAGTTCACTAAGACCCTCGACAAAAACCTCGCAACAAGCTTGTTCAAGATACTTCTGAAGTACAGGCCCGAGGATAAAGCTGAGAAGAAGGAACGACTTTTGAAAAGAGCTCAGGCAGAGGCAGAAGGCAAAACAGTTGAAGCCAAGAAGCCTATTGTTGTGAAATATGGTCTCAATCACGTTACCTACCTTATTGAGCAGAATAAAGCACAGCTGGTTGTGATTGCTCATGATGTAGACCCAATTGAATTGGTTGTCTGGCTTCCAGCATTGTGCAGGAAGATGGAAATTCCATACTGCATTGTCAAGGGCAAGGCACGCCTGGGATCGATTGTGCACAAGAAAACTGCATCTGTTTTGTGCTTGACCAGTGTTAAGAATGAAGACAAATTGGAGTTTAGCAGAGTCTTAGAAGCTATTAAGGCTAACTTCAATGACAAGTATGACGAGTACAGAAAGAAGTGGGGTGGTGGAATCATGGGCTCCAAATCCCAAGCCAGAACCAAGGCAAAGGAAAGGCTTCTTGCCAAGGAAGCTGCTCAGAGGATGTCTTAG 780 0.4667 MAPKRGGKAPVPASKKKPEKVTNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQLQRKKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPEDKAEKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTSVKNEDKLEFSRVLEAIKANFNDKYDEYRKKWGGGIMGSKSQARTKAKERLLAKEAAQRMS 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi79g00020 259 MobiDBLite consensus disorder prediction 1 37 - -
Sebi79g00020 259 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 116 206 IPR004038 -
Sebi79g00020 259 Gene3D - 51 234 IPR029064 -
Sebi79g00020 259 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 43 235 - -
Sebi79g00020 259 ProSitePatterns Ribosomal protein L7Ae signature. 167 184 IPR004037 GO:0042254|GO:1990904
Sebi79g00020 259 Coils Coil 102 122 - -
Sebi79g00020 259 PRINTS Ribosomal protein L7A family signature 47 64 IPR001921 -
Sebi79g00020 259 PRINTS Ribosomal protein L7A family signature 218 238 IPR001921 -
Sebi79g00020 259 PRINTS Ribosomal protein L7A family signature 125 145 IPR001921 -
Sebi79g00020 259 PRINTS Ribosomal protein L7A family signature 186 210 IPR001921 -
Sebi79g00020 259 PRINTS Ribosomal protein L7A family signature 30 47 IPR001921 -
Sebi79g00020 259 PRINTS Ribosomal protein L7A family signature 67 86 IPR001921 -
Sebi79g00020 259 PRINTS Ribosomal protein L7A family signature 91 104 IPR001921 -
Sebi79g00020 259 MobiDBLite consensus disorder prediction 12 26 - -
Sebi79g00020 259 SUPERFAMILY L30e-like 89 230 IPR029064 -
Sebi79g00020 259 PRINTS Ribosomal protein L7A/RS6 family signature 129 143 IPR018492 -
Sebi79g00020 259 PRINTS Ribosomal protein L7A/RS6 family signature 164 174 IPR018492 -
Sebi79g00020 259 PRINTS Ribosomal protein L7A/RS6 family signature 148 161 IPR018492 -
Sebi79g00020 259 PRINTS Ribosomal protein L7A/RS6 family signature 174 188 IPR018492 -
Sebi79g00020 259 FunFam 60S ribosomal protein L7a 51 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi79g00020 Sebi-Chr79 527112 529095 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi79g00020 1 259 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 86.100 3.68e-169 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi79g00020 K02936 - gmx:100792324 486.878