Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi799g00013 ATGGGTGACAAGTCCCAAGTATTGGAGGCTGTGTTGAAGGAAACTGTAGATTTGGAGAATATACCCATTGAGGAGGTTTTTGAGAATCTGAGATGTAGCAGAGAAGGCCTCACCAGTGAGGCTGCTGAGGAGAGGTTGGTCATTTTCGGTCACAATAAGCTTGAAGAGAAAAAGGAGAGCAAATTCTTGAAGTTCTTGGGGTTTATGTGGAATCCTCTGTCTTGGGTTATGGAGGCTGCTGCTATAATGGCAATTGCACTTGCCAATGGAGGGGGGAAGCCTCCAGACTGGCAAGATTTTGTGGGTATCATCACCTTGCTTCTCATCAATTCAACTATTAGTTTCATTGAGGAGAACAATGCTGGTAATGCTGCAGCAGCTCTCATGGCTCGTCTTGCTCCAAAAGCAAAGGTTCTTCGAGATGGTAGATGGAATGAGCAAGATGCCGCGGTTCTGGTTCCCGGTGACATAATTAGCATTAAGCTTGGAGACATTATACCAGCTGATGCTCGTCTTCTTGAAGGGGATCCTTTGAAAATTGATCAGTCTGCACTTACGGGTGAGTCCCTGCCAGTGACAAAGGGCCCTGGAGATGGTGTGTATTCTGGTTCTACCTGCAAACAAGGAGAGCTTGAAGCTGTGGTCATTGCAACTGGTGTTCATACCTTTTTCGGGAAAGCTGCTCACCTTGTAGATACCACTAATCAAGTTGGTCACTTTCAAAAGGTCTTGACTGCAATTGGGAACTTCTGCATATGTTCAATTGCTGTGGGGATGATTATTGAGATTATTGTTATGTACCCCATCCAAGACCGAGAGTATCGCCCTGGAATTGATAACCTTCTTGTACTTCTTATTGGGGGGATTCCAATTGCCATGCCCACTGTTCTCTCAGTGACCATGGCTATTGGTTCTCATAGGCTATCTCAGCAGGGGGCTATCACAAAGAGAATGACAGCTATTGAAGAGATGGCAGGCATGGATGTGCTTTGCAGTGATAAGACTGGGACCTTAACATTAAATAAGCTTACTGTTGACAAAAATCTTATTGAGGTCTTTGCAAAAGGAGTGGATGCAGATACTGTTGTTTTGATGGCAGCTCGAGCTTCGAGGCTTGAGAATCAAGATGCAATAGATTCTGCAATAGTTGGGATGTTGGCTGATCCAAAGGAGGCCCGAGTTGGTATCCAAGAAATACATTTTCTTCCTTTCAATCCTACTGATAAGCGAACAGCATTAACTTATATTGATCGTGATGGTAAAATGCATAGAGTTAGCAAAGACATTGAACGTAGAGTTCATGCAGTGATAGATAAGTTTGCAGAGCGTGGTTTACGATCCCTTGCAGTAGCATACCAGGAAGTTCCGGATGGAAGGAAAGAGAGTGCTGGAGGCCCATGGCAGTTTATTGGCCTTATGCCTCTGTTTGACCCACCTAGGCATGACAGTGCAGAAACAATACGGAGGGCACTAAACCTTGGAGTAAATGTCAAAATGATTACAGGGGATCAGCTAGCTATAGGAAAGGAAACAGGCCGTCGCTTGGGAATGGGTACCAATATGTATCCTTCATCTGCATTGCTTGGGCAGGATAAGGATGAATCCATTTCTGCCTTACCCATCGACGAACTAATAGAAAAAGCTGATGGATTTGCTGGTGTTTTTCCTGAGCACAAGTATGAGATTGTGAAACGCTTACAAGCTAGGAAACACATCTGTGGAATGACTGGTGATGGAGTGAATGATGCACCTGCACTCAAGAAGGCAGACATTGGTATAGCTGTTGCTGATGCGACAGATGCAGCTCGAAGTGCATCTGATATTGTTTTAACAGAACCTGGTCTAAGTGTTATTATTAGTGCTGTGTTGACCAGCCGAGCTATCTTCCAGAGAATGAAAAATTATACAGTGAGCAATTGA 1920 0.4437 MGDKSQVLEAVLKETVDLENIPIEEVFENLRCSREGLTSEAAEERLVIFGHNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLLINSTISFIEENNAGNAAAALMARLAPKAKVLRDGRWNEQDAAVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDGVYSGSTCKQGELEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCICSIAVGMIIEIIVMYPIQDREYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFAKGVDADTVVLMAARASRLENQDAIDSAIVGMLADPKEARVGIQEIHFLPFNPTDKRTALTYIDRDGKMHRVSKDIERRVHAVIDKFAERGLRSLAVAYQEVPDGRKESAGGPWQFIGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDESISALPIDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTVSN 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi799g00013 639 Gene3D - 134 218 - -
Sebi799g00013 639 FunFam Plasma membrane ATPase 470 624 - -
Sebi799g00013 639 SFLD Haloacid Dehalogenase 313 628 - -
Sebi799g00013 639 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Sebi799g00013 639 PANTHER CALCIUM-TRANSPORTING ATPASE 19 637 - -
Sebi799g00013 639 ProSitePatterns E1-E2 ATPases phosphorylation site. 333 339 IPR018303 -
Sebi799g00013 639 Pfam Cation transporter/ATPase, N-terminus 20 83 IPR004014 -
Sebi799g00013 639 PRINTS H+-transporting ATPase (proton pump) signature 576 592 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi799g00013 639 PRINTS H+-transporting ATPase (proton pump) signature 433 451 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi799g00013 639 PRINTS H+-transporting ATPase (proton pump) signature 548 564 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi799g00013 639 PRINTS H+-transporting ATPase (proton pump) signature 607 632 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi799g00013 639 FunFam Membrane H(+)-ATPase1 421 476 - -
Sebi799g00013 639 Gene3D - 343 476 IPR023299 GO:0000166
Sebi799g00013 639 NCBIfam HAD-IC family P-type ATPase 551 636 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi799g00013 639 NCBIfam HAD-IC family P-type ATPase 103 351 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi799g00013 639 Pfam E1-E2 ATPase 132 310 - -
Sebi799g00013 639 SUPERFAMILY Calcium ATPase, transduction domain A 134 231 IPR008250 -
Sebi799g00013 639 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 636 IPR023298 -
Sebi799g00013 639 Gene3D - 96 637 - -
Sebi799g00013 639 SFLD p-type atpase 313 628 IPR044492 -
Sebi799g00013 639 Pfam haloacid dehalogenase-like hydrolase 327 590 - -
Sebi799g00013 639 NCBIfam plasma-membrane proton-efflux P-type ATPase 36 637 IPR006534 GO:0008553|GO:0016020|GO:0120029
Sebi799g00013 639 SUPERFAMILY HAD-like 327 623 IPR036412 -
Sebi799g00013 639 PRINTS P-type cation-transporting ATPase superfamily signature 471 482 - -
Sebi799g00013 639 PRINTS P-type cation-transporting ATPase superfamily signature 576 595 - -
Sebi799g00013 639 PRINTS P-type cation-transporting ATPase superfamily signature 599 611 - -
Sebi799g00013 639 PRINTS P-type cation-transporting ATPase superfamily signature 181 195 - -
Sebi799g00013 639 PRINTS P-type cation-transporting ATPase superfamily signature 331 345 - -
Sebi799g00013 639 PRINTS P-type cation-transporting ATPase superfamily signature 493 503 - -
Sebi799g00013 639 Gene3D - 328 613 IPR023214 -
Sebi799g00013 639 FunFam Plasma membrane ATPase 134 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi799g00013 Sebi-Chr799 177743 181978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi799g00013 1 637 Primary Pumps ATPases AT5G62670 92.627 0.0 1187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi799g00013 K01535 - cpap:110819640 1162.13