Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi798g00012 ATGTCATCATCCTCTTCAACTACATTATCACTGGACCACCTCCCTCCTTCCGAGCAACTTTGTTATGTCCACTGCAATATTTGTGACACCATCCTCGCTGTAAGTGTTCCCTGCACAAGCTTGTTCAAGACAGTTACTGTCCGATGTGGCCATTGCACTAACCTCCTTCCTGGTTTGCTTCTTCCATCGCCCAATCAATTTCATTTGGGCCACTCTTTCTTCTCCCCGCCTCATAACCTTCTGGAGGAGATGCCAAACCAATCTCAAAATTTTCTTATGAACCACACAAATGCATCATCAAATGACTTTTCCATGCCTGCTAGGACTGCTGTAGCTGCAGATCATGAGCTTCCACGCCCACCTACCATAAATAGACGTACTTTGTCAAGTTCAGCTGGTAAAGAGGAAAAAGCTCCTGAGAAGAGACAGAGAGTCCCCTCTGCCTACAACCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTAAATCCCGATATAACTCACAGGGAAGCCTTCAGCGCTGCTGCCAAGAATTGGGCCCACTTCCCACACATTCACTTTGGTCTCATGCCTGATCAGACTATGAAGAAGACAAATGTGTGCCAGCAGGAAGGTGAGGAGGTTCTCATGAAAGATGGGTTTTATGCTTCAGCTAATGTTGGTGTTTCACCATACTAA 681 0.464 MSSSSSTTLSLDHLPPSEQLCYVHCNICDTILAVSVPCTSLFKTVTVRCGHCTNLLPGLLLPSPNQFHLGHSFFSPPHNLLEEMPNQSQNFLMNHTNASSNDFSMPARTAVAADHELPRPPTINRRTLSSSAGKEEKAPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKKTNVCQQEGEEVLMKDGFYASANVGVSPY 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi798g00012 226 PANTHER PROTEIN YABBY 6-RELATED 1 200 IPR006780 GO:0007275
Sebi798g00012 226 MobiDBLite consensus disorder prediction 130 144 - -
Sebi798g00012 226 MobiDBLite consensus disorder prediction 118 144 - -
Sebi798g00012 226 SUPERFAMILY HMG-box 129 183 IPR036910 -
Sebi798g00012 226 CDD HMG-box_SF 144 180 - -
Sebi798g00012 226 FunFam Axial regulator YABBY 135 206 - -
Sebi798g00012 226 Pfam YABBY protein 16 190 IPR006780 GO:0007275
Sebi798g00012 226 Gene3D High mobility group box domain 127 187 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi798g00012 Sebi-Chr798 190254 192550 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi798g00012 27 224 C2C2-YABBY Transcription Factor Family AT4G00180 54.299 8.67e-61 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Sebi798g00012 YABBY 3.8e-64 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi798g00012 K25796 - gmx:100798441 353.984