Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi796g00020 ATGTCATCCAGCAATTCTCTGAATGTGGAATTGTCAAAGAAGACTTCATTTTTGGGTCTGAAAAGATGGGTTTTGATTGGGATTGGTGTTGGTGCATTTATAGTTCTGATTCTTTGTATATTATCTATATGGGTGATGTTTCGGAGAAAGTCTAAGAGATCTCTGGACAAGTACTCTGTATCTCAAATACCAAATATCTCAAAAGATATCAATGTCGACAAGGTTGGTGCGCAGAATTCTCATGTTCAACAAGAAAATGTGTTTATTCCTGTTCATGATAAGGCGAATGATAATAATTCAGACAAGGTATCAGTTCATTTGGGGATGAGCAAATCCAGTGATCCTGACAATGTCAGTCAGTGCAGCTCAATTTATCATCATGATAGAGGATTTAGTTCACTCTCAGGGGAAGAAGGAAGCTCTGGGAATGTTAAGAAGCAGTCTACATTGTCATATGGAGGACTGGCGACTACCTCTCCTTTAGTTGGCTTGCCGGAATTTTCTCATCTTGGGTGGGGGCACTGGTTTACACTTAGAGATCTGGAACAAGCAACCAATCGCTTCTCAGCTGAGAACATTCTTGGTGAAGGTGGATATGGGGTTGTTTACAGGGGCAGACTGATCAATGGAACGGAGGTGGCAGTGAAAAAACTGCTTAACAATTTGGGACAAGCAGAGAAAGAATTCAGGGTTGAAGTGGAGGCTATAGGTCATGTTAGGCATAAGCATCTTGTGCGCCTGCTCGGATATTGCGTAGAAGGTGTTCACAGGCTGCTGATATATGAATATGTGAACAATGGTAACTTAGAACAATGGTTACATGGGGACATGCGCCAGCATGGGACACTTACCTGGGAGGCCCGCATGAAAGTTTTGCTTGGCACAGCAAAAGCGCTTGCTTATTTACATGAAGCAATAGAACCAAAAGTCATTCACCGGGACATAAAGTCTAGCAACATATTGATTGATGATGAGTTCAATGCAAAGGTTTCTGATTTTGGTTTGGCCAAACTTTTGGATTCAGGAGAAAGTCACATAACTACTAGAGTAATGGGGACCTTTGGTTATGTGGCACCGGAATATGCTAACAGTGGTTTGTTAAATGAGAAGAGTGACATTTACAGCTTTGGTGTCCTTCTGCTGGAAGCAGTTACTGGAAGGGACCCTGTAGACTATGCACATCCTGCCAATGAGGTTAATCTTGTTGAATGGCTCAAGATGATGGTGGGGGCAAGGAGGGCTGAGGAAGTTGTGGACTCAAGCCTCGAAGTTAAACCATCAGCGCGTGCTTTAAAACGTTCCCTTCTGGTTGCACTTAGGTGTATTGATCCTGATGCTGACAAGAGGCCCAAAATGAGTCAAGTTGTAAGGATGCTCGAAGCTGATGAATATCCATTTCGAGAGGATCGAAGGAATAGAAGGAGCGGCACTAGCAGCGTTGAAATTGAAGCAGTGAAGGATATTTCTGGTCCATCTGATGCTGAAAAGGTGGGGAATTCTGAAAGCCATGTGCCTGAAACAACTCAAGGATAG 1533 0.4312 MSSSNSLNVELSKKTSFLGLKRWVLIGIGVGAFIVLILCILSIWVMFRRKSKRSLDKYSVSQIPNISKDINVDKVGAQNSHVQQENVFIPVHDKANDNNSDKVSVHLGMSKSSDPDNVSQCSSIYHHDRGFSSLSGEEGSSGNVKKQSTLSYGGLATTSPLVGLPEFSHLGWGHWFTLRDLEQATNRFSAENILGEGGYGVVYRGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKHLVRLLGYCVEGVHRLLIYEYVNNGNLEQWLHGDMRQHGTLTWEARMKVLLGTAKALAYLHEAIEPKVIHRDIKSSNILIDDEFNAKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANSGLLNEKSDIYSFGVLLLEAVTGRDPVDYAHPANEVNLVEWLKMMVGARRAEEVVDSSLEVKPSARALKRSLLVALRCIDPDADKRPKMSQVVRMLEADEYPFREDRRNRRSGTSSVEIEAVKDISGPSDAEKVGNSESHVPETTQG 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi796g00020 510 Pfam Protein kinase domain 190 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi796g00020 510 CDD STKc_IRAK 194 460 - -
Sebi796g00020 510 SUPERFAMILY Protein kinase-like (PK-like) 172 461 IPR011009 -
Sebi796g00020 510 Coils Coil 208 228 - -
Sebi796g00020 510 PANTHER OS01G0323000 PROTEIN 1 479 - -
Sebi796g00020 510 Gene3D Transferase(Phosphotransferase) domain 1 264 475 - -
Sebi796g00020 510 Gene3D Phosphorylase Kinase; domain 1 169 263 - -
Sebi796g00020 510 MobiDBLite consensus disorder prediction 466 510 - -
Sebi796g00020 510 ProSitePatterns Protein kinases ATP-binding region signature. 194 217 IPR017441 GO:0005524
Sebi796g00020 510 ProSiteProfiles Protein kinase domain profile. 188 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi796g00020 510 SMART serkin_6 188 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi796g00020 510 FunFam Putative receptor-like protein kinase 170 263 - -
Sebi796g00020 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Sebi796g00020 510 FunFam Putative receptor-like serine/threonine-protein kinase 264 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi796g00020 Sebi-Chr796 222770 225672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi796g00020 19 462 Trihelix Transcription Factor Family AT1G70460 40.312 1.38e-97 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Sebi796g00020 Pkinase 5.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi796g00020 - - gmx:100778444 915.605