Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi793g00006 ATGCTATCTATCTTTCTTTTGTGCTTATTCTTTTTCACTTTTAGGCATTGCTCAGCTAGAGATACCATAACCATTAACAACTCCTTACAAGATGGTGGAGAGGATACTCTCATTTCAGCAGGAGAAAGTTTTGAACTTGGATTTTTCACTCCTAATGGAAGCACTAGTGGCAAAAGATACGTGGGAATATGGTACTACAACTTAACTCCACAAACAGTTGTGTGGGTTGCTAACAGAGACAACCCACTTCCAGATTCTGGGGGTTCTTTTGCCATTGCAGAGGATGGGAATCTCAGGGTTATGGACAGAAATGGGAAATCCTACTGGGGAACAAATCTTGAAAGATCATCTTCACACAACAAGACAGTGAAATTATTGGACACTGGGAACCTTATTATAAGCAATGTTGACCAAGAAAACCATCCAGTGAAGATTCTGTGGCAGAGTTTTGCTAATCCAACAGATACTTTTCTTCCAGGCATGAAAATGAGTGACAGTTTAGCATTAACTTCATGGAGAAGTTATGAAGACCCAGCAAGAGGGAACTACTCTTTTGAGCAAGATCAAGGAGAGAATCAGTATATCATATGGAAAAGATCCATCAGGTATTGGAAAAGCAGTGTATCAGGTAAGTTTGTTGGAACTGGTGAAATGTCTTCAGCAATATCTTACTTGTTGTCTAATTTCAGCATGAGAATATCCCCAAACAACACTGTTCCCTTTCTCACTTCATCACTATATAGTGACACTAGGCTGGTGATGACTTACTGGGGTCAGCTTCAGTACCTAAAGATGGATTCAGAGAAGAAATGGTTGTTAGTTTGGGTAGAGCCAAGAGATAGGTGTAGTGTGTTCAATGCATGTGGAAACTTTGGTAGTTGTAATAGCAAGTATGATTCTATGTGCAAGTGTTTGCCTGGGTTCAAGCCTAATTCTATTGAAAATTGGAATGCTGGAGACTATTCAGGTGGATGCAGCAGGGAAACAAATGTGTGTAGTGAGGATGCTAAGAGTGATACATTTTTGAGCTTAAAAATGATGAAAGTAGGGAACCCAGATGCTCAATTTAATGCTAAGAGTGAACAGGAATGCATGTCAGAGTGCCTCAACAATTGCCAGTGCTATGCATATTCATATGAAGACACTGCAAAGCAGGGTGATGGTGGTCATGCTGATGCAATTTGTTGGATTTGGTATGAGGACTTGAACAATCTTGAAGAAGAGTATGAGGGTGGTTGTGACCTACATGTTCGCGTGGCATTTTCTGATATAGAAGAGGATAGCTACCAAACAGAAAGGCCTGTGTCCTCACAAAAGATCATTGCACTCATTTTTACAACTGTGTTTTTCTTAATTATTCTCTCAAGTACTATTACATGTATATACTTGCGGAAAAGGAGAAAAGCCAAGACACAAGAAAGCAGAGTGTATGTTCAGAAGAACTCAGGGATTAACTTATATGACAGTGAGAGATACGTTAGAGACTTGATTGAGTCTGGTAGGTTCAAAGAAGATGATGCACAGGCCATTGATATTCCACATTTTCATTTGGAAAGCATACTTGATGCAACTAATAACTTTGCAAATGCAAACAAGCTTGGACAAGGAGGGTTTGGTCCTGTTTACAAGGGAAAATTTCCTGGAGGACAAGAAGTAGCAGTGAAGAGACTTTCAAGTTGTTCTGGACAAGGTTTAGAGGAGTTTAAGAATGAAGTTGTGTTGATTGCCAAGCTTCAACATCGAAACCTAGTTAGACTTTTGGGTTATTGTTTGGAAGGAGATGAAAAGATGCTAGTATATGAATATATGCCAAATAGAAGCTTGGATGCTTTCATTTTTGACCGGAAGCTGTGTGGTTCATTAGACTGGGATATGCGCTTCAAGATTATTTTGGGGATTGCTCGAGGGCTACTTTATCTACATGAAGATTCTAGGTTGAGGATTATTCATAGAGACTTGAAAACAAGCAATATTCTACTAGATGAAGAGAAGAATCCTAAAATCTCAGACTTTGGCTTAGCCAGGATATTTGGAGGAAAAGAGACAGTAGCCAACACAGATAGAGTGGTTGGAACTTATGGGTATATGTCTCCAGAGTATGCACTTGATGGACATTTTTCAGTCAAGTCTGATGTCTTTAGCTTTGGTGTGGTGGTGCTTGAGATTATTAGTGGAAAAAGGAACACTGGATTTTATCAACCAGAGCATGAATTGAGTCTTCTAGGATATGCATGGCATTTATGGAAAGTAGGCAGGGCATTGGACTTCATGGACCAGACACTATATGAAACATGCAATGCAGATGAATGCTTGAAATGTGTGAATGTGGGGCTGTTATGCTTACAAGAAGATCCAAATGAACGTCCCACCATGTCCAATGTGGTTTTCATGCTTGGCAGTGAATCTAATACTCTTCCAACTCCCAAGGAACCAGCCTTTGTTAGTAGGAGATGCCCTTCAAGCAGAGCATCTACTTCCAGTAAAGTCGAAACTTTTTCACGTAATGAATTGACAGTTACTTTAGAAAATGGCAGGTAG 2538 0.3976 MLSIFLLCLFFFTFRHCSARDTITINNSLQDGGEDTLISAGESFELGFFTPNGSTSGKRYVGIWYYNLTPQTVVWVANRDNPLPDSGGSFAIAEDGNLRVMDRNGKSYWGTNLERSSSHNKTVKLLDTGNLIISNVDQENHPVKILWQSFANPTDTFLPGMKMSDSLALTSWRSYEDPARGNYSFEQDQGENQYIIWKRSIRYWKSSVSGKFVGTGEMSSAISYLLSNFSMRISPNNTVPFLTSSLYSDTRLVMTYWGQLQYLKMDSEKKWLLVWVEPRDRCSVFNACGNFGSCNSKYDSMCKCLPGFKPNSIENWNAGDYSGGCSRETNVCSEDAKSDTFLSLKMMKVGNPDAQFNAKSEQECMSECLNNCQCYAYSYEDTAKQGDGGHADAICWIWYEDLNNLEEEYEGGCDLHVRVAFSDIEEDSYQTERPVSSQKIIALIFTTVFFLIILSSTITCIYLRKRRKAKTQESRVYVQKNSGINLYDSERYVRDLIESGRFKEDDAQAIDIPHFHLESILDATNNFANANKLGQGGFGPVYKGKFPGGQEVAVKRLSSCSGQGLEEFKNEVVLIAKLQHRNLVRLLGYCLEGDEKMLVYEYMPNRSLDAFIFDRKLCGSLDWDMRFKIILGIARGLLYLHEDSRLRIIHRDLKTSNILLDEEKNPKISDFGLARIFGGKETVANTDRVVGTYGYMSPEYALDGHFSVKSDVFSFGVVVLEIISGKRNTGFYQPEHELSLLGYAWHLWKVGRALDFMDQTLYETCNADECLKCVNVGLLCLQEDPNERPTMSNVVFMLGSESNTLPTPKEPAFVSRRCPSSRASTSSKVETFSRNELTVTLENGR 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi793g00006 845 Pfam PAN-like domain 335 404 IPR003609 -
Sebi793g00006 845 PIRSF SRK 1 845 IPR024171 GO:0004674
Sebi793g00006 845 ProSitePatterns Serine/Threonine protein kinases active-site signature. 648 660 IPR008271 GO:0004672|GO:0006468
Sebi793g00006 845 ProSiteProfiles Bulb-type lectin domain profile. 22 146 IPR001480 -
Sebi793g00006 845 Pfam Protein tyrosine and serine/threonine kinase 530 796 IPR001245 GO:0004672|GO:0006468
Sebi793g00006 845 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 15 150 - -
Sebi793g00006 845 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 492 602 - -
Sebi793g00006 845 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 603 806 - -
Sebi793g00006 845 SMART ntp_6 336 419 IPR003609 -
Sebi793g00006 845 Pfam D-mannose binding lectin 72 165 IPR001480 -
Sebi793g00006 845 ProSiteProfiles PAN/Apple domain profile. 332 413 IPR003609 -
Sebi793g00006 845 CDD B_lectin 26 153 IPR001480 -
Sebi793g00006 845 SMART blect_4 28 153 IPR001480 -
Sebi793g00006 845 Gene3D - 15 151 IPR036426 -
Sebi793g00006 845 SUPERFAMILY Protein kinase-like (PK-like) 511 828 IPR011009 -
Sebi793g00006 845 CDD STKc_IRAK 533 798 - -
Sebi793g00006 845 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 5 788 - -
Sebi793g00006 845 Gene3D Transferase(Phosphotransferase) domain 1 603 809 - -
Sebi793g00006 845 CDD PAN_AP_plant 332 420 - -
Sebi793g00006 845 Gene3D Phosphorylase Kinase; domain 1 493 602 - -
Sebi793g00006 845 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 177 IPR036426 -
Sebi793g00006 845 ProSiteProfiles Protein kinase domain profile. 527 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi793g00006 845 SMART serkin_6 527 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi793g00006 845 ProSiteProfiles EGF-like domain profile. 278 314 IPR000742 -
Sebi793g00006 845 Pfam S-locus glycoprotein domain 209 311 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi793g00006 Sebi-Chr793 174126 178551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi793g00006 505 813 Receptor kinase-like Gene Family AT4G23230 59.494 2.00e-126 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi793g00006 PK_Tyr_Ser-Thr 2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi793g00006 - - ath:AT4G03230 1041.18