Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi793g00005 ATGTATTCCTTTGCTCCTACTCATCCTGTTATTGTTTTCTCTACATCCTTTACAAACAACAATGAATCACAACTAGAAATGAACAGGCACCACGTTGTCTTATCTCGCAACATGAGAATAATTGTTCTCTTCCACATGTATGCTTGGTTGCTGTGCTTTTCTCAGCCGTGTTTAGCAGGAGATACTCTGAACGCCGGCCAGAATATAACAGGTAATGGAATCCTTGTTTCATCTGGGAATAAATTTGAACTAGGCTTCTTTTCTCCTCTTAACGTTACTGGCGGTAAAGGAAGGTACTTAGGGATGTGGTATCACAGGCAAGAGAAGTCAGAAGCTCTAACAGTGGTGTGGGTAGCAAACAGAGACAACCCTGTAGCTGTTGATTCCACTGGAGTTTTCCAAATAGCAGAGGATGGGAATCTGGTAGTGGTAGACACATATGGAAATAATTATTGGTCATCCAAAATGAAAGGCTCTTCATCCACAAACAGGACAGTGAAGCTCATGGATTCTGGGAACCTTGTGTTACTAGATGGAATGAAGAAAGTGTGGGAGAGCTTTGAACACCCAACTGACACATTCCTACCTGGCATGAAGATGGATAGGAATTTGAAGTTGACTAGTTGGAGAAACCTCACAGACCCAGGAAGTGGGAACTTCACATTTAAGATGGAACAAACAGGGGACAACCGTTTCATCATCTTAAACCATGACCAACTTTACTGGGAGAGTGAAGAACAAGGGATACTGAATTCAGTAGCAAAGTCTGATGATGACATGAGCACTGAAGTTTACATCTTGTTGACCAACTTCACCATTGCTCAATCAACGAACCTAATTCTCGAGAACTACGAGAACACGAGGCTGCTCCTCAATTATACAGGGATGATACAATTTATGGTGAGAGATAATTTCCAAGGCGATTCTGTTCGGTGGTTTCAGCCAAAAACAAAGTGCTTGATATATAATGATTGCGGGAACTTTACCAGCTGCAATGACAATGATAAGGTATGCAAATGTTTGCCTGGATTCACTGATGAAAATAATTACACGGGAGTTGGAGATTCTTCTCTAATATGTACCAGAAAATCAGCATCATGCGGAAAAGACACCACCAGGTTCTTAAACTTGGTCATGATGAAAATAAGAAGGCCTGATAAAAAAGTCACTGCAGAAAACGAAACAGATTGCCAATCTAAGTGCCTTGAGATGTGTCCCCAGTGCCAGGCTTATTCATACGCTAAACCTACCCTGCAGCGTGGTGCTTTCCCCACCACATGTTGGATCTGGACACAGGATTTAACTACTCTTAAAGAAGAGTATATTGGTGGTGATGGTAGGAAACTGTTTCTCCGGGTAGACGAATCAGACATAGCACCAACTCCTAGAACTTGTGAGCCTTGCGGCACAAACACAGTCCCTTATCCGCTGAGCACTGGACCCAGTTGTGGAGACCCTGCGTACTTCAAGTTCAGCTGCAGCAGCTCAACAGGTGAGCTTAGCTTCACCACCACCAACAACGAAAGTTACCGAGTTACTCTTGTAGATGCAGTTTCAAGAAACTTCATAATTCGGGTCACTCAAGATGAGGGTAATTCTTATAATCGTTACTGCGGTGAAAACAAGGATAAAAATCTGGAGGTTTCTTCACCGTTTGATATGACCAACGACACTGCGTGCTCTGACCTAGTACAAGTTAATTGGCAACTACCCTCAGAACCAACTTGTGCTCAATCCTCTGATTGCCAAGGTTGGAAACATTCAACTTGCAAAGGAAATAGGTTGTCTTTGCAATGTAAACTATCATTGGCATGGCGATCTTTTAAGTTGTACCGAAAACGAAAAATAGCTGCTAAGCTTAAGCAAGAAGGGGAAAGCATACAGAGAAAAAGAGGGCGCTATTATGATAGTGAAAGACAAGTGAAAGATTTGATAGACTTGGAGGGATTAGAAGAAAAAGATAATGAAGGCATAGAGGTCCCCTATTTTGATTTTGAGAGCATACTAGTAGCTACTGATTATTTCTCAGATGCAAACAAGCTTGGAAAAGGGGGTTATGGACCAGTTTACAAGGGTAGGCTTGAAGGAGGTCAAGATATTGCAGTGAAGAGGCTTTCAAGTGTTTCATCACAGGGCTTACAAGAATTCAAGAATGAGACTGAGGCAAGCACCGAGAGGGTTGTAGGGACATATGGATACATGTCTCCCGAGTATGCATTGGATGGACATTTCTCAACCAAGTCAGATGTTTTCAGCTTTGGTGTAATGTTGCTAGAGATTATCAGTGGGAAAAAGAACACGGGATTCTATCAATCTAAAGCAATTTCAAGCCTTTTGGGTTATGCCTGGAGACTCTGGACAGAGAACAAATTGCTGGATTTAGTAGACTTATCTTTGCGTGAAACTTACAATGCAAACCAATTTATTAAGTGTGCACATATTGGGCTCTTATGTGTACAAGATGAACCAAATGATCGACCAAACATGTCAAATGTTGTGATAATGCTTGATAGTGAAACTGCAACCCTGCCAACCCCTAAACAACCAACCTTTTTTACGCGTAAAGACCTATCTAGCACAGCTTCTTCCAGTCTGCAGCTTGAGAGTAGCATTCAAGATGGTCGATAG 2628 0.4201 MYSFAPTHPVIVFSTSFTNNNESQLEMNRHHVVLSRNMRIIVLFHMYAWLLCFSQPCLAGDTLNAGQNITGNGILVSSGNKFELGFFSPLNVTGGKGRYLGMWYHRQEKSEALTVVWVANRDNPVAVDSTGVFQIAEDGNLVVVDTYGNNYWSSKMKGSSSTNRTVKLMDSGNLVLLDGMKKVWESFEHPTDTFLPGMKMDRNLKLTSWRNLTDPGSGNFTFKMEQTGDNRFIILNHDQLYWESEEQGILNSVAKSDDDMSTEVYILLTNFTIAQSTNLILENYENTRLLLNYTGMIQFMVRDNFQGDSVRWFQPKTKCLIYNDCGNFTSCNDNDKVCKCLPGFTDENNYTGVGDSSLICTRKSASCGKDTTRFLNLVMMKIRRPDKKVTAENETDCQSKCLEMCPQCQAYSYAKPTLQRGAFPTTCWIWTQDLTTLKEEYIGGDGRKLFLRVDESDIAPTPRTCEPCGTNTVPYPLSTGPSCGDPAYFKFSCSSSTGELSFTTTNNESYRVTLVDAVSRNFIIRVTQDEGNSYNRYCGENKDKNLEVSSPFDMTNDTACSDLVQVNWQLPSEPTCAQSSDCQGWKHSTCKGNRLSLQCKLSLAWRSFKLYRKRKIAAKLKQEGESIQRKRGRYYDSERQVKDLIDLEGLEEKDNEGIEVPYFDFESILVATDYFSDANKLGKGGYGPVYKGRLEGGQDIAVKRLSSVSSQGLQEFKNETEASTERVVGTYGYMSPEYALDGHFSTKSDVFSFGVMLLEIISGKKNTGFYQSKAISSLLGYAWRLWTENKLLDLVDLSLRETYNANQFIKCAHIGLLCVQDEPNDRPNMSNVVIMLDSETATLPTPKQPTFFTRKDLSSTASSSLQLESSIQDGR 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi793g00005 875 PIRSF SRK 576 722 IPR024171 GO:0004674
Sebi793g00005 875 PIRSF SRK 33 476 IPR024171 GO:0004674
Sebi793g00005 875 PIRSF SRK 718 874 IPR024171 GO:0004674
Sebi793g00005 875 Pfam Protein tyrosine and serine/threonine kinase 717 834 IPR001245 GO:0004672|GO:0006468
Sebi793g00005 875 FunFam Receptor-like serine/threonine-protein kinase SD1-8 55 187 - -
Sebi793g00005 875 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 715 841 - -
Sebi793g00005 875 Pfam S-locus glycoprotein domain 276 346 IPR000858 GO:0048544
Sebi793g00005 875 ProSiteProfiles Bulb-type lectin domain profile. 60 189 IPR001480 -
Sebi793g00005 875 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 49 826 - -
Sebi793g00005 875 Pfam PAN-like domain 367 435 IPR003609 -
Sebi793g00005 875 Gene3D Transferase(Phosphotransferase) domain 1 703 848 - -
Sebi793g00005 875 SUPERFAMILY alpha-D-mannose-specific plant lectins 115 215 IPR036426 -
Sebi793g00005 875 SMART tyrkin_6 675 836 IPR020635 GO:0004713|GO:0006468
Sebi793g00005 875 SMART blect_4 66 190 IPR001480 -
Sebi793g00005 875 SUPERFAMILY Protein kinase-like (PK-like) 661 860 IPR011009 -
Sebi793g00005 875 CDD B_lectin 69 190 IPR001480 -
Sebi793g00005 875 Pfam D-mannose binding lectin 114 208 IPR001480 -
Sebi793g00005 875 Gene3D - 57 189 IPR036426 -
Sebi793g00005 875 CDD PAN_AP_plant 366 453 - -
Sebi793g00005 875 ProSiteProfiles PAN/Apple domain profile. 367 454 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi793g00005 Sebi-Chr793 152294 156467 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi793g00005 718 854 Receptor kinase-like Gene Family AT4G05200 51.095 5.61e-45 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi793g00005 PK_Tyr_Ser-Thr 2.2e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi793g00005 - - tpra:123882048 751.895