Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi793g00004 ATGGAGATGAAGAAGTGTGAGCTGTGCAAGGTTCCGGCAAGGACGTTCTGTGAGTCAGACCAGGCTAGCTTGTGCTGGGACTGCGATGCCAAGGTTCACGGTGCCAACTTCTTGGTTGCAAGGCACTCCAGGACCCTCCTCTGCGACACTTGCCGTTCCCCAACGCCGTGGAAAGCCTCCGGCGCCAGGCTCGGCAACACCGTCTCTGTCTGTGACCGTTGCGCCGCTGAAGAAGAAGAAGTGGAAGAGAGCGAAGGAGGCAATGACGATGAGATGGACACGGAGGACGACGACGATTTTGATAGCGACGTCGTCGACGGAGACGGCGATAATCAGGTCGTGCCTTGGTCCTCCTCGACGCCGCCTCCGCCGGCGGCGAGTTCTTCCGGCAGCGAATGGTCGTCGGTTAGCAGGAGGATCCGAACGGTTCAACATCTCAACGGAGGTGTGGTGGGAGTTGAGCGAGGAGGTGGCGTGTGGCGGAGAACCACCGCCGAAGGAGTGACTGAAGCCGTGTGGGAGAGCATCCGACGCCGTTTGATGTTTGGGACACGAAGCTTCTCAACCGCATGA 573 0.5951 MEMKKCELCKVPARTFCESDQASLCWDCDAKVHGANFLVARHSRTLLCDTCRSPTPWKASGARLGNTVSVCDRCAAEEEEVEESEGGNDDEMDTEDDDDFDSDVVDGDGDNQVVPWSSSTPPPPAASSSGSEWSSVSRRIRTVQHLNGGVVGVERGGGVWRRTTAEGVTEAVWESIRRRLMFGTRSFSTA 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi793g00004 190 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Sebi793g00004 190 CDD Bbox1_BBX-like 5 47 - -
Sebi793g00004 190 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 5 149 - -
Sebi793g00004 190 SMART bboxneu5 1 47 IPR000315 GO:0008270
Sebi793g00004 190 MobiDBLite consensus disorder prediction 75 136 - -
Sebi793g00004 190 Pfam B-box zinc finger 2 44 IPR000315 GO:0008270
Sebi793g00004 190 MobiDBLite consensus disorder prediction 76 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi793g00004 Sebi-Chr793 112324 113146 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi793g00004 1 97 C2C2-CO-like Transcription Factor Family AT5G54470 59.794 8.89e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sebi793g00004 zf-B_box 4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi793g00004 - - gmx:100782655 158.688