LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi792g00024	ATGGCTTCAAAACTCATTACTTTCTTCATTCTCTTCCTCCCTCTCAAATCACTCTCTTCTGCATATACCCCGTCATGGGTGAAAGCTGGTTATTACTATTCTGGTAGTGAAATTTCGGCTTCAGACATAAAAGCCACGCTTTTCAATCACCTCTTTTGCGCTTTTGCTTATATAAACTCCACCAACTACAACATATTTATCAACTCTTCGGAGGAGCACAAGTTCTCCACCTTCACCGACACTGTAAAGCTCCAAAACCCATCTGTTTCAACGCTTTTATCCATCTGGGGTGGCAGAGACGACCCTTCAGTGTTCAACTCAATGCTAAACCAATCTTCTCATAGGAAATCTTTCATTGATTCTTCAATCAGTTCAGCAAGGCAATATGGGTTTCAGGGCATAGACCTTTATGCAGTCAGGCCAAGGCAGGGTAAGGACCTTGCCAATTTTGGAACCCTTTTGAAGGAGTGGCGAGTTGCAATAACTTCAGAGGCAAGAAACTCTAACAAGCCAGAGTTAGCATTGGTGATGGCAGGTTACTACCTCAAAGCTTCAGACTCCTTCAGTTACCCCTTCGAATCAATGCAGATGAACTTGGATTGGGTACATCTTGTGTCATATAATTACTATCTTCCTAAAAAGGACAATGTCACTGGTTTTCATGCTGCTTTATATGGTCCATCTGGTTGGGATAATACTGATTCTAGTATCAAAGAGTGGAGGAGAAGGGGATTTTCATCTAGCAAGCTTGTAATTGGCTTGCTTTATCATGGATATGCATGGAAACTTGTGAACCCAGGAGACAATGGCGTGGGAACACCAGCATCAGGACCTGCCATTACAAAGGACGGTTCCATGGCTTATAAGCTGATAAAGAGTTACATCAGAAGCTTTGGAGGGGGTGTTGTTTCACATTATAATGCTACTTTTGTGGTGAATCACTTCACAGTTGCATCCACCACTTGGGTTAATTTTGATGATGCGGAGGTAATCAGGGCTAAAGTTTCTTATGCAAAGAAAAATGGGCTACTTGGTTACAGCATGTTCCAATTGAGTAGTGATGAAAATTGGGTCCTTTCAAGGGCAGCTCAAGAAGTAGATGAAGATCATCATAAGAGGAGGTTGCTGATAATTGTTCTGCTTACTACTCTGACTTTTGCACTACTATTGGGAATATTATTTTGCTACTACCACCGAGGAACTGTAGCCACTATTACAAGAATATTTTATAAACTAAGGAGGTATTTATCAGCAGCTGAAGAAAAAGATCTTGATGGAAATCATTCTGATCTGATAGTGTTCAGTTATCTCACAATTAAAGTGGCAACAGATAACTTCTCAAAAGATAATAAGCTTGGAGAGGGGGGATTTGGCACAGTGTACAAGGGAAAATTACGGAAGGGACAGGAAATAGCTGTAAAAAGACTCTCAGAAACTTCAAATCAAGGCCTTGAAGAGTTCAAAAATGAGATCACACTTACAGCAAGACTACAGCATGTGAATTTAGTTAGACTTCTGGGTTACTGCACAAAAAGGGATGAGAAGGTTCTGATCTATGAATACCTGCCAAACAAAAGCTTAGATCATTTCCTTTTTGATCCAAGGAAATCAATTCTTTTAGACTGGAGCAAGCGTGTCAATATCATTGAAGGGGTTACTCAAGGCCTTGTTTATCTCCAAGAGTATTCAAATTTTACTATAGTCCATCGAGATCTTAAAGCTAGTAATGTTTTGTTAGATCATGAGATGAATCCCAAGATATCATATTTTGGCATGGCTAGAATTTTCAGGAAATATGACCTTGAAGCAAACACAAACAGGATCGTGGGAACATATGGGTATGTACCACCTGAGTATGTGAGAAAAGGCATATACTCAACCAAGTACGATGTTTATAGTTTTGGAGTTCTTCTCTTGCAAATCATTAGTGGAAAAAGGACTTCATGTTATTACGGTACACATGAAAATATGAACCTTTTGGAATATGCATATGAGCTGTGGATGGAAGGCAGGGGTGTAGAGTTTATTGACCCGTCATTGGATGATACAACATCACCTTATAAAATCATGAGATGCATGCAGGTGGCTCTGTTGTGCGTTCAAGATAACTCTGGAGATAGACCTTCCATGTTAGAAGTTGATTCACTGCTCAAGAATGAAGCTGCACCTATTGGTACTCCCAAAATGCCAGCTTTTTCAATTAAAAAACATGAAGATGAGGAAGAAACATTCCACTATGGGATCAAACTTTCTTCAAACAATGATGTTACAATTTCTGAACTGGCACCAAGATGA	2295	0.3978	MASKLITFFILFLPLKSLSSAYTPSWVKAGYYYSGSEISASDIKATLFNHLFCAFAYINSTNYNIFINSSEEHKFSTFTDTVKLQNPSVSTLLSIWGGRDDPSVFNSMLNQSSHRKSFIDSSISSARQYGFQGIDLYAVRPRQGKDLANFGTLLKEWRVAITSEARNSNKPELALVMAGYYLKASDSFSYPFESMQMNLDWVHLVSYNYYLPKKDNVTGFHAALYGPSGWDNTDSSIKEWRRRGFSSSKLVIGLLYHGYAWKLVNPGDNGVGTPASGPAITKDGSMAYKLIKSYIRSFGGGVVSHYNATFVVNHFTVASTTWVNFDDAEVIRAKVSYAKKNGLLGYSMFQLSSDENWVLSRAAQEVDEDHHKRRLLIIVLLTTLTFALLLGILFCYYHRGTVATITRIFYKLRRYLSAAEEKDLDGNHSDLIVFSYLTIKVATDNFSKDNKLGEGGFGTVYKGKLRKGQEIAVKRLSETSNQGLEEFKNEITLTARLQHVNLVRLLGYCTKRDEKVLIYEYLPNKSLDHFLFDPRKSILLDWSKRVNIIEGVTQGLVYLQEYSNFTIVHRDLKASNVLLDHEMNPKISYFGMARIFRKYDLEANTNRIVGTYGYVPPEYVRKGIYSTKYDVYSFGVLLLQIISGKRTSCYYGTHENMNLLEYAYELWMEGRGVEFIDPSLDDTTSPYKIMRCMQVALLCVQDNSGDRPSMLEVDSLLKNEAAPIGTPKMPAFSIKKHEDEEETFHYGIKLSSNNDVTISELAPR	764

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi792g00024	764	CDD	STKc_IRAK	452	719	-	-
	Sebi792g00024	764	Pfam	Glycosyl hydrolases family 18	31	354	IPR001223	GO:0005975
	Sebi792g00024	764	SUPERFAMILY	Chitinase insertion domain	258	325	IPR029070	-
	Sebi792g00024	764	SUPERFAMILY	Protein kinase-like (PK-like)	429	737	IPR011009	-
	Sebi792g00024	764	Gene3D	Transferase(Phosphotransferase) domain 1	522	724	-	-
	Sebi792g00024	764	ProSiteProfiles	Glycosyl hydrolases family 18 (GH18) domain profile.	26	370	IPR001223	GO:0005975
	Sebi792g00024	764	FunFam	Uncharacterized protein	421	521	-	-
	Sebi792g00024	764	FunFam	Uncharacterized protein	522	726	-	-
	Sebi792g00024	764	ProSiteProfiles	Protein kinase domain profile.	446	717	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi792g00024	764	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	567	579	IPR008271	GO:0004672\|GO:0006468
	Sebi792g00024	764	SMART	2g34	26	354	IPR011583	GO:0008061
	Sebi792g00024	764	Pfam	Protein tyrosine and serine/threonine kinase	448	713	IPR001245	GO:0004672\|GO:0006468
	Sebi792g00024	764	Gene3D	-	256	325	IPR029070	-
	Sebi792g00024	764	SUPERFAMILY	(Trans)glycosidases	29	355	IPR017853	-
	Sebi792g00024	764	Gene3D	Phosphorylase Kinase; domain 1	409	521	-	-
	Sebi792g00024	764	ProSitePatterns	Protein kinases ATP-binding region signature.	452	474	IPR017441	GO:0005524
	Sebi792g00024	764	SMART	serkin_6	446	722	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi792g00024	764	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	297	761	-	-
	Sebi792g00024	764	Gene3D	Glycosidases	41	355	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi792g00024	Sebi-Chr792	359762	363458	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi792g00024	434	764	Receptor kinase-like Gene Family	AT4G11530	50.148	5.45e-113	356

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Sebi792g00024		Glyco_hydro_18	1.8e-55	CL0058

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi792g00024	-		-	aprc:113847882	1238.4