Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi792g00006 ATGAGTAGTAGCAGTAACAGCGAGGGGCATTCAACTCTGCTCCATGGCAAATACGAGCTAGGTCGGATTTTAGGCCACGGAACCTTCGCGAAGGTGTATCACGCGCGGAACTTGCAAACAGGGAAGAACGTCGCGATGAAGGTAGTTGCGAAGGAGAAGGTCATAAAAGTTGGAATGATGGAGCAGATCAAGAAAGAGATCTCCGTCATGAAGATGGTGAAACACCCGAATATCGTTGAGCTTCATGAGGTTATGGCTAGCAAATCCAAGATCTACATCGCCATGGAGCTTGTTCGTGGTGGTGAGCTCTTCAACAAGGTAGCTAAAGGTCGATTGAAAGAAGACCTCGCCAGAGTCTACTTTCAGCAGTTAATCTCCGCCGTTGATTTCTGCCACAGCCGCGGCGTTTACCACCGTGACCTCAAGCCGGAGAATCTTCTCCTTGACGAAGATGGAAACCTTAAGGTCTCTGATTTTGGTCTCAGCACCTTCTCCGGCCAGGATGGATTGTTGCACACCACGTGCGGCACTCCGGCGTATGTTTCGCCGGAGGTGATTGCGAAGAAAGGCTACGACGGTGCTAAGGCTGATATTTGGTCTTGTGGAGTAATCCTCTATGTGCTTCTTGCAGGGTTTTTACCTTTTCAGGATGATAATTTGGTTGCTATGTATAAGAAGATTTACAGAGGTGACTTCAAATGTCCACCTTGGTTCTCTGTGGAAGCTCGAAGGCTTGTTACGAAGCTTCTAGATCCGAATCCGAATAATCGAATAACAATTTCCAAGATCATGGACTCGTCTTGGTTCAAGAAACCGGTGCCGAAGAGCATGATGACGGCGAGGAGGAAAGAGGAAGAGGCGTTTGATTTTGAGATGAAGTCGAATGTACCAACGACGATGAACGCGTTTCACATAATTTCGCTATCGGAAGGGTTTGATTTGTCTCCGTTGTTTGAGGAGAAGAAGAGAGAGGAGAGGGAGGAGCTGAGGTTCGCGACGGCGGGGACGCCGAGCAGAGTGATATCGAGATTGGAGGAGGTGGCGAAGGCGGTGAAGTTCGATGTGAAGAGTAGTGATACGAAGGTGAGGCTTCAGGGGCAAGAGCGTGGGAGGAAGGGGAAGTTGGCTATTGCGGCGGATATTTACGCCGTGACGCCGTCGTTTATGGTGGTGGAGGTGAAGAAAGATAATGGTGACACTTTGGAGTATAATCAGTTCTGCAGCAAAGAGCTTCGTCCTGCGCTTAAAGATATCTTCTGGACTTCCTCTGAGAATTCGACGCCTGCAGCTTGA 1293 0.4911 MSSSSNSEGHSTLLHGKYELGRILGHGTFAKVYHARNLQTGKNVAMKVVAKEKVIKVGMMEQIKKEISVMKMVKHPNIVELHEVMASKSKIYIAMELVRGGELFNKVAKGRLKEDLARVYFQQLISAVDFCHSRGVYHRDLKPENLLLDEDGNLKVSDFGLSTFSGQDGLLHTTCGTPAYVSPEVIAKKGYDGAKADIWSCGVILYVLLAGFLPFQDDNLVAMYKKIYRGDFKCPPWFSVEARRLVTKLLDPNPNNRITISKIMDSSWFKKPVPKSMMTARRKEEEAFDFEMKSNVPTTMNAFHIISLSEGFDLSPLFEEKKREEREELRFATAGTPSRVISRLEEVAKAVKFDVKSSDTKVRLQGQERGRKGKLAIAADIYAVTPSFMVVEVKKDNGDTLEYNQFCSKELRPALKDIFWTSSENSTPAA 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi792g00006 430 Gene3D Phosphorylase Kinase; domain 1 15 99 - -
Sebi792g00006 430 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524
Sebi792g00006 430 SMART serkin_6 18 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi792g00006 430 Pfam NAF domain 297 356 IPR004041 GO:0007165
Sebi792g00006 430 Gene3D Kinase associated domain 1, KA1 297 421 - -
Sebi792g00006 430 ProSiteProfiles NAF domain profile. 295 319 IPR018451 GO:0007165
Sebi792g00006 430 FunFam Non-specific serine/threonine protein kinase 11 302 - -
Sebi792g00006 430 CDD CIPK_C 301 416 - -
Sebi792g00006 430 CDD STKc_SnRK3 17 268 - -
Sebi792g00006 430 FunFam Non-specific serine/threonine protein kinase 295 420 - -
Sebi792g00006 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Sebi792g00006 430 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 417 - -
Sebi792g00006 430 FunFam Non-specific serine/threonine protein kinase 9 97 - -
Sebi792g00006 430 Pfam Protein kinase domain 18 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi792g00006 430 ProSiteProfiles Protein kinase domain profile. 18 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi792g00006 430 SUPERFAMILY Protein kinase-like (PK-like) 15 280 IPR011009 -
Sebi792g00006 430 Gene3D Transferase(Phosphotransferase) domain 1 100 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi792g00006 Sebi-Chr792 92425 93717 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi792g00006 5 429 CBL-interacting serine-threonine protein kinases AT4G30960 74.603 0.0 626
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Sebi792g00006 Pkinase 5.4e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi792g00006 - K07198 var:108321114 727.243