Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi792g00003 ATGCTCCGCAAATTGTTCTTTCGCAAGCCTCCTGATGGCCTCCTTGAGATCTGCGAGAGAGTTTACGTTTTTGATTGCTGCTTCACCACGGATGCTTGGAATGAAGAGAATTACAAAGTGTACATGGATGGAATAGTTGGTCAACTTAGAGAGAACTTGCCTGATGCTTCCATTCTGGTTTTCAATTTCCGTGAGGATCAGACCAAGAGTCTGATGGCAAACGTCTTGTCTGAGTATGACATTACTATAATGGACTATCCCAGGCACTATGAAGGTGTCCCCGTTCTCAAAATGGAGCTCATACACCACTTTTTAAGGTCTGGTGAAAGTTGGCTCTCGCTTGGGCACCATAATGTGTTGTTGATGCATTGTGAACGTGGTGGTTGGCCTGTTTTGGCTTTCATGTTGGCTGCATTGTTGATTTACCGAAAGGTTTATACTGGGGAGCAGAGGACTTTGGATATGCTTTACAAACAGGCTCCGAACGAGCTTTTGCATTTGTTGACACCGTTGAATCCCATCCCTTCCCAATTGAGATATCTGCAGTATGTTTCCAGGAGGAATGTGGCCTTAGATTGGCCTCCACTGGACAGGGCACTCATGTTGGACTGCGTCATTCTCAGATTCATCCCAAATTTTGATGGGGAAGGTGGTTGTCATCCAGTGTTTAGAATTTTTGGACAGGATCCTTTTAGTGCAGATAAAAATCCTAAAATGCTGTACTCAATGCCAAAGAAAAGCAAAAATTTCCGGGCTTACAAGCAGGGAGAGTGTGAACTAATTAAAATTGATATCAATTGCCATATTCAAGGTGATGTCGTGATAGAGAGCATTAACTTAAATGGTGACATGGAACGTGAAATGATGATGTTCCGAGTCATGTTCAACACGGCTTTTGTTAGATCTAATATTCTGATGCTTAATCGGGATGAAATTGACATCTTATGGGATGCTAAAGACCACTTTCCAAGAGATTTCAGAGCTGAGATCCTTTTCTCAGAGATCGATGCTGCTGCAGCAGTTATTGCCAGTGGTACCTCCTCATGCTTTGAGGAGAAGGAGGGACTGCCCATGGAAGCATTTGCCAAGGTTCAAGAGATCTTCAGCCATGTGGACTGGTTGAACCCCGGGGCAGATGCTGCACTAAATGTGCTTCAACAGATAAGTGCTTCGGCTATCATGAACGACAAGTTGGATACAGTTTCTGATCAGTATGTGGAAACTGGCACTTCATTGCATGAAACAGGTCCTAAAATGTCTCACGGGAATTCAAATGAAGCACTACAGTCTTTGTCCTCAACTAAGCGATCTCCAAATAATGATACAAGTAGAAAAGAAGATAAGACAAAAAAGATTGATGCTACTCCAAAGCGGTATTTGGAAACTGGCACTTCATTGCATGAAACAGGTCCTAAAATGTCTCAGGGGAATTCAAATGAAACAATACAGTCTTTGTCCTCAACCAAGCGATCCCCAAATAATGATACGGGTAGAAAAGAGGATAAGACAAACAAGGTTGATGCTAATCCACAGCTGCATGTGGAAACTGGCACTTCATTGCATGAAACAGGTCCTAAAATGTCTCAGGGGAGTTCAAATGAAGCAATACAGTCTCTGTCCTCAACTAAGCGATCCCCAAATAGTGATATGAATAGAAAAGAGGATAAGACCAAAAAGGTTGATGCTACTCCACAGCAGTATTTGGAAACTGGCACTTCATTGCATGAAGCAGGTCCTAAAGTGTCTCAAGGGAATTCAAATGAATCAATACAATCTTTGTCCTCAGCCAGGCGATCCCCAAATAATGATACGAGTAGAAAAGAAGATAAGACAAACAAGGTTGATGCTACTCCACAAAGATACATGGAAACTGGTGCTTCATTGCATAATACAGGTCCTAAAATGTCTCAGAGGAATTCAAATGAATCAATACAATCTTTGTCCTCAACCAAGCGAACACCAAATAATGATACGAGTAGAAAAGAGGATAAGACAAACAAGGTTGATGCTACACCACAGCTGTATGTCCAAACTGGCACTTCATTGCATGAAACAGGTCCTAAAATGTCTCAGGGGAGTTCAAATGAAGCAATACAGTCTCTGTCCTCAACTACGCGATCCCCAAGTAATGATATGAATAGAAAAGAAGATAAGACCAAAAAGGTTGATGCTACTCCACTGCAGTATGTGGAAACTGACACTTCATTAAATGAAACAGGTCCTAAAATGTCTCAAGGGAATTCAAATGAAGCAATACAGTCTTTATCCTCAACTAAGCAATCCCAAAATAGTGATACGAATAGAAAAGAGAATAAGATAAACAAGGCTGATGCTACTCCACAGCAACCCAGCTTATCTGAGAGAACCTTGGAATCCAGTAAATGTCCAACAGAGTCGACAGTTCTAGACATAAAACTGCAGGTGTCTGATCTTGCCTCATCTGGTTCTGTGGATTCCTCTCTTTCCCCTGGAACACCGCCTCTGCGGCCTCCCTCAACTAATCGTGCTAAAGAAGTTCATGATTCTCCTCCCCACTCGGAATCACCTCCTCATAGTATTTTGCCTTCACAATCAAGACAACAATCACAAGACAAAAGTCATTCACCTATTTCTAGCTTTACACTTGGGACCCGATTGTCATCTGGTTCTACTCATACAGCTTCCTCTGACCACCCTAATCTGTCATTACAAAAATCTTCTGCTCCTGCAGCACCTGCTGCTCCACCACCTCCAATGCTATTTGATAAAGGAGGTCTAAAACCAGGTGGTGCTTTTCCAAGGTCTCTTCTTGGGGGTAGTGATGGAAATAATGTGTCTGGCACAACAGGACCTCGATCTAGTTCACCTACCGGCTCAAAGGGACGACTTCTATCACGTACGATTGGCTCAAAGAACAACACCAAAAAGTTGAAGCCATTGCATTGGTTGAAACTATCTAGAGCAGTGCAAGGAAGTTTGTGGGCTGAGACACAGAAATCTGGTGAAGCTTCCAAGGCCCCAGAGATTGATATGACTGAGCTTGAGAATCTCTTCTCAGCAGCAGTCCCAAGTTCAGGTCCTGCAAAGAAGTCAAATGCCCAAAACTCAGTCAAGCCTAAATGTGATAAAGTGCAACTGGTTGAGCATAGGCGAGCATATAATTGTGAAATCATGCTTTCACAAGTCAAGGTGCCATTGCATGATTTAATGAGCTCAGTGCTAGCACTGGAAGATTCAGCGCTAGACACTGATCAGGTTGAAAACCTCATAAAGTTTTGTCCTACAAAAGAGGAGATGGAAGTAATCAAGGGCTATAACGGGGAAAAAGATAAGTTAGGGAGATGTGAACAGTTCTTCATGGAGTTGATGAAAGTACCACGAGTAGAATCCAAGCTCAGAGTTTTTTCATTCAAGATTCAGTTCCAGTCTCAGGTTTCTGATCTTAGAAATAGCCTTAATGTTGTGAGTTCTGCATCAGAAGAGATCAGGAATTCTGTCAAATTGAAGAGAGTTATGCAAACAATACTTTCTCTAGGAAATGCTTTGAACCAAGGAACTACCAGGGGTTCTGCTATTGGATTCAGATTAGATAGCCTTCTTAAACTGACCGAAACACGTGCACGGAATAACAAGATGACTCTCATGCATTATCTTTGTAAGGTGCTAGCTGACAAATTACCAGAAGTTTTAGATTTCTCCAAGGATCTTGCTAATCTAGAGCCAGCAGCTAAGATCCAACTGAAGTTTCTGGCAGAAGAGATGCAAGCTATAAACAAAGGATTAGAGAAAGTTGTGCAGGAATTATCAACCTCTGAAAATGATGGTCCGATATCAGAAACTTTCCGCAAGAAATTGAAAGAGTTCCTCTGTTCTGCTGAAGCTGAAGTCCGTTCATTGGCTTCACTATATTCTGGCGTGGGTAGGAAAGTGGATGCATTGATTCTTTATTTTGGTGAAGATCCATCTCGCTGCCCATTTGAGCAAGTTGTGACAACTTTGTTGAACTTCACTAGAATGTTCAACAAATCCCATGAAGAAAACTGCAAGCAGCTAGAGCTTGAAATGAAGAAAACAGCAGAAAGTGAGAAAAAGAAATGTGAATCAGAAAGGATATTACCTAGGGCAATCCGGACTGGCAATGTCAAATAG 4128 0.4205 MLRKLFFRKPPDGLLEICERVYVFDCCFTTDAWNEENYKVYMDGIVGQLRENLPDASILVFNFREDQTKSLMANVLSEYDITIMDYPRHYEGVPVLKMELIHHFLRSGESWLSLGHHNVLLMHCERGGWPVLAFMLAALLIYRKVYTGEQRTLDMLYKQAPNELLHLLTPLNPIPSQLRYLQYVSRRNVALDWPPLDRALMLDCVILRFIPNFDGEGGCHPVFRIFGQDPFSADKNPKMLYSMPKKSKNFRAYKQGECELIKIDINCHIQGDVVIESINLNGDMEREMMMFRVMFNTAFVRSNILMLNRDEIDILWDAKDHFPRDFRAEILFSEIDAAAAVIASGTSSCFEEKEGLPMEAFAKVQEIFSHVDWLNPGADAALNVLQQISASAIMNDKLDTVSDQYVETGTSLHETGPKMSHGNSNEALQSLSSTKRSPNNDTSRKEDKTKKIDATPKRYLETGTSLHETGPKMSQGNSNETIQSLSSTKRSPNNDTGRKEDKTNKVDANPQLHVETGTSLHETGPKMSQGSSNEAIQSLSSTKRSPNSDMNRKEDKTKKVDATPQQYLETGTSLHEAGPKVSQGNSNESIQSLSSARRSPNNDTSRKEDKTNKVDATPQRYMETGASLHNTGPKMSQRNSNESIQSLSSTKRTPNNDTSRKEDKTNKVDATPQLYVQTGTSLHETGPKMSQGSSNEAIQSLSSTTRSPSNDMNRKEDKTKKVDATPLQYVETDTSLNETGPKMSQGNSNEAIQSLSSTKQSQNSDTNRKENKINKADATPQQPSLSERTLESSKCPTESTVLDIKLQVSDLASSGSVDSSLSPGTPPLRPPSTNRAKEVHDSPPHSESPPHSILPSQSRQQSQDKSHSPISSFTLGTRLSSGSTHTASSDHPNLSLQKSSAPAAPAAPPPPMLFDKGGLKPGGAFPRSLLGGSDGNNVSGTTGPRSSSPTGSKGRLLSRTIGSKNNTKKLKPLHWLKLSRAVQGSLWAETQKSGEASKAPEIDMTELENLFSAAVPSSGPAKKSNAQNSVKPKCDKVQLVEHRRAYNCEIMLSQVKVPLHDLMSSVLALEDSALDTDQVENLIKFCPTKEEMEVIKGYNGEKDKLGRCEQFFMELMKVPRVESKLRVFSFKIQFQSQVSDLRNSLNVVSSASEEIRNSVKLKRVMQTILSLGNALNQGTTRGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKVLADKLPEVLDFSKDLANLEPAAKIQLKFLAEEMQAINKGLEKVVQELSTSENDGPISETFRKKLKEFLCSAEAEVRSLASLYSGVGRKVDALILYFGEDPSRCPFEQVVTTLLNFTRMFNKSHEENCKQLELEMKKTAESEKKKCESERILPRAIRTGNVK 1375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi792g00003 1375 SMART it6_source 960 1375 IPR015425 -
Sebi792g00003 1375 PANTHER FORMIN-J 594 1360 - -
Sebi792g00003 1375 MobiDBLite consensus disorder prediction 814 964 - -
Sebi792g00003 1375 MobiDBLite consensus disorder prediction 623 654 - -
Sebi792g00003 1375 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 199 335 IPR035892 -
Sebi792g00003 1375 MobiDBLite consensus disorder prediction 493 508 - -
Sebi792g00003 1375 Pfam Formin Homology 2 Domain 965 1333 IPR015425 -
Sebi792g00003 1375 MobiDBLite consensus disorder prediction 467 492 - -
Sebi792g00003 1375 MobiDBLite consensus disorder prediction 776 798 - -
Sebi792g00003 1375 MobiDBLite consensus disorder prediction 728 764 - -
Sebi792g00003 1375 MobiDBLite consensus disorder prediction 547 562 - -
Sebi792g00003 1375 SMART PTEN_C2_2 195 334 IPR014020 -
Sebi792g00003 1375 MobiDBLite consensus disorder prediction 851 900 - -
Sebi792g00003 1375 MobiDBLite consensus disorder prediction 670 709 - -
Sebi792g00003 1375 MobiDBLite consensus disorder prediction 932 964 - -
Sebi792g00003 1375 SUPERFAMILY Formin homology 2 domain (FH2 domain) 902 1350 - -
Sebi792g00003 1375 Gene3D Formin, FH2 domain 961 1344 IPR042201 -
Sebi792g00003 1375 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 11 185 IPR029021 -
Sebi792g00003 1375 MobiDBLite consensus disorder prediction 601 616 - -
Sebi792g00003 1375 MobiDBLite consensus disorder prediction 710 724 - -
Sebi792g00003 1375 MobiDBLite consensus disorder prediction 439 457 - -
Sebi792g00003 1375 Gene3D - 197 337 - -
Sebi792g00003 1375 MobiDBLite consensus disorder prediction 509 546 - -
Sebi792g00003 1375 Gene3D Protein tyrosine phosphatase superfamily 13 196 IPR029021 -
Sebi792g00003 1375 ProSiteProfiles Formin homology-2 (FH2) domain profile. 960 1359 IPR015425 -
Sebi792g00003 1375 MobiDBLite consensus disorder prediction 411 798 - -
Sebi792g00003 1375 Coils Coil 1334 1354 - -
Sebi792g00003 1375 Pfam C2 domain of PTEN tumour-suppressor protein 198 334 IPR014020 -
Sebi792g00003 1375 ProSiteProfiles C2 tensin-type domain profile. 197 335 IPR014020 -
Sebi792g00003 1375 Coils Coil 1240 1260 - -
Sebi792g00003 1375 MobiDBLite consensus disorder prediction 563 600 - -
Sebi792g00003 1375 MobiDBLite consensus disorder prediction 411 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi792g00003 Sebi-Chr792 43335 54624 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi792g00003 1 494 Protein tyrosine phosphatase (PTP) family AT5G58160 58.008 0.0 618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi792g00003 - - cam:101513310 1608.19