Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi790g00003 ATGCATATGGAGAAGACCAAAGGGGTGAGAAAAGGCGCATGGACATACGAGGAAGACAAGCTACTCAAGGCTTGCATTAACAAGTATGGGGTAGGAAAATGGCATTTGGTTACTCAAAAAGCAGGATTGAATAGGTACCGAAAAAGTTGTAGATTGAGGTGGTTGAATTATTTAAATCCCAACATTAACAGAGGAAGCTTTGCTGAGGATGAAGTTGATATGATTCTAAGGCTACATAAACTCCTAGGCAACAGATGGTCATTGATTGCCGCAAGGCTTCCGGGTAGGACAGCTAACGATGTGAAGAACTACTGGCACACACACTTAAGCAAGAAGAAGGTGACCTCTAATTATAACATGGAAGACAAGAAAGAAAAGGAGAAACCAATAAAGGAAACCATGAAACCTCATGAAGTTATAAAACCTCGACCTCGAACTTTTTCAAATAATTCACCATGGTTGAAGGGGAAACACATTCTTGCAAATGATGGTGATGGTGTAATTAGAGAGTGTGCTATGCCTGTAGTGGCTTCAAATAATGATAATGTTCCAACAGAGACAACTATGCTCCCACTTGGTGGTGATAGAGATTGTGATGCCGCACAGTCGTCTGCAATGTGGTGGGAGAGTTTGTTGAACTTTGATGGCGATGATGAGAAAGTTGGCACATGTTCTTTGTCAAATGAGAATTCCATCTTGGAACTTCCAAATGTGGAGAACTTCTTCACCCAAGGCCCCACTGATGGTACTGACTGTTGCTGGGATTCCAACCTTTGTGATTTTGATTCTCTTTGGGATCTTTAA 804 0.4154 MHMEKTKGVRKGAWTYEEDKLLKACINKYGVGKWHLVTQKAGLNRYRKSCRLRWLNYLNPNINRGSFAEDEVDMILRLHKLLGNRWSLIAARLPGRTANDVKNYWHTHLSKKKVTSNYNMEDKKEKEKPIKETMKPHEVIKPRPRTFSNNSPWLKGKHILANDGDGVIRECAMPVVASNNDNVPTETTMLPLGGDRDCDAAQSSAMWWESLLNFDGDDEKVGTCSLSNENSILELPNVENFFTQGPTDGTDCCWDSNLCDFDSLWDL 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi790g00003 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 58 IPR017930 -
Sebi790g00003 267 SUPERFAMILY Homeodomain-like 8 105 IPR009057 -
Sebi790g00003 267 SMART sant 10 60 IPR001005 -
Sebi790g00003 267 SMART sant 63 111 IPR001005 -
Sebi790g00003 267 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 135 - -
Sebi790g00003 267 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Sebi790g00003 267 Gene3D - 66 137 - -
Sebi790g00003 267 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Sebi790g00003 267 Gene3D - 11 63 - -
Sebi790g00003 267 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Sebi790g00003 267 Pfam Myb-like DNA-binding domain 64 109 IPR001005 -
Sebi790g00003 267 CDD SANT 69 109 IPR001005 -
Sebi790g00003 267 FunFam Myb transcription factor 11 63 - -
Sebi790g00003 267 CDD SANT 13 58 IPR001005 -
Sebi790g00003 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 113 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi790g00003 Sebi-Chr790 101062 102461 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi790g00003 4 215 MYB Transcription Factor Family AT1G66370 49.315 1.89e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi790g00003 Myb_DNA-binding 1.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi790g00003 - K09422 tpra:123921946 291.197