Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi790g00002 ATGGAGAAGACGAGAGGGGTGAGAAAAGGCGCATGGACATACGAGGAAGACAACCTGCTCAAGGCTTGCATTAACAAGTATGGGGTAGGGAAATGGCATTTGGTTCCTGAAAAAGCAGGATTAAATAGGTGCCGAAAAAGTTGTAGACTGAGGTGGTTGAATTATTTAAATCCCAACATCAACAGAGGAAGCTTTACTGAGGATGAAGTTGATATGATACTAAGGTTACATAAACTCCTAGGGAACAGATGGTCATTGATTGCTGCAAGGCTTCCGGGTAGGACAGCTAACGATGTAAAGAACTACTGGCACACACACTTAAGCAAGAAGAAGGTGACCTCTAGTTATAACATTGATGACAAGAATGAAAAAGAGAAACCAATAAAGGAAACCATGAGACCTCATGAAGTTATAAAACCTCGACCTCTAACTTTATCAAATGATTCACCGTTGTTGAAGGGAAAACACATTCTTGCAAATAATGATGGTGGTGTAACTAGAGAGTGTTCTATGCCTCTAGTGGCATCAAATGATTATAATGTTCCGACTGCGGAGTGTGACACACAAATAACTATGCTTCCACTTGGGGGTGATAGAGATTGTGATGCACAACCATATCTTGCTAATGCCCCACATTCTGCAATGTGGTGGGAGAGCTTGTTGAACTTGGATGACAATGTAGGCGATGGTGAGAAAGTTGGCACAAGTTATTTGTCAAATGAGAATTCCATCTTGGAGCTTCCAAATGTGGAGAACTTCTTCACCCAAGGCCCCATTGGTGCTGACTGTTGTTGGGATTCCACCGTTTGTGATTTCGATGCTCTTTGGGATCTTTAA 837 0.4205 MEKTRGVRKGAWTYEEDNLLKACINKYGVGKWHLVPEKAGLNRCRKSCRLRWLNYLNPNINRGSFTEDEVDMILRLHKLLGNRWSLIAARLPGRTANDVKNYWHTHLSKKKVTSSYNIDDKNEKEKPIKETMRPHEVIKPRPLTLSNDSPLLKGKHILANNDGGVTRECSMPLVASNDYNVPTAECDTQITMLPLGGDRDCDAQPYLANAPHSAMWWESLLNLDDNVGDGEKVGTSYLSNENSILELPNVENFFTQGPIGADCCWDSTVCDFDALWDL 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi790g00002 278 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Sebi790g00002 278 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Sebi790g00002 278 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Sebi790g00002 278 SMART sant 61 109 IPR001005 -
Sebi790g00002 278 SMART sant 8 58 IPR001005 -
Sebi790g00002 278 Gene3D - 9 61 - -
Sebi790g00002 278 Gene3D - 63 135 - -
Sebi790g00002 278 CDD SANT 64 107 IPR001005 -
Sebi790g00002 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Sebi790g00002 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 56 IPR017930 -
Sebi790g00002 278 CDD SANT 11 56 IPR001005 -
Sebi790g00002 278 FunFam Myb transcription factor 9 61 - -
Sebi790g00002 278 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Sebi790g00002 278 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Sebi790g00002 278 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi790g00002 Sebi-Chr790 45224 47056 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi790g00002 2 224 MYB Transcription Factor Family AT1G66370 49.351 5.59e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi790g00002 Myb_DNA-binding 9.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi790g00002 - K09422 tpra:123921946 286.189