Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi78g00091 ATGGAAATTGATCTGAATGATGCAGTGACTGAGGTTGAGAAGAATGCAACTTGCAATGGGGATTGTCACAAAGGTGCTTGTGTTTGCTGTTTGTCCTCTCCAACTTGTTCATCTTCTGGTTCCTCTTCAGCTCGTGTCTCTTCCTCTTATCTTGAGCTCTGGCATGCTTGTGCTGGCCCTCTTACCAACCTTCCAAAGAAAGGGAATGTGGTGGTCTATTTTCCACAAGGACACTTAGAACAAGCTGCATCTTTCTCTCCCTTCTCTCCATTGGAGATGCCCACCTATGATCTTCAGCCACAGATCTTTTGCAGGGTTGTTAATGTCCAGCTACTTGCTAATAAGGAGAATGATGAGGTTTATACACAGGTTACTTTGCTTCCCCAGGCAGAGTTAGCAGGGTTATATTTGGAGGGCAAAGAGGTTGAGGGATTGGGAGATGATGAAGAGGGAAATGGAAAAACAGCTACAAAATCAACCCCTCACATGTTTTGCAAAACTCTTACTGCCTCTGATACCAGCACTCATGGGGGGTTCTCTGTTCCTCGTAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGACCCTCTCAAGAGCTTGTTGCAAAAGACCTACATGGTGTGGAGTGGAAATTTCGCCATATTTACAGAGGTCAACCAAGGCGGCATCTGCTCACTACTGGCTGGAGTATTTTTGTTAGCCAAAAGAATCTTGTTTCTGGTGATGCAGTTCTCTTTCTAAGGGGTGAAAATGGAGAATTGAGATTGGGAATCAGAAGAGCTGCTCGGCCAAGAAATGGTCTTCCTGAGTCAATTGTTGGTAACCAGAGTTGTTATCCCAATTTCCTTTCTTCTGTGGCTAATGCTATATCTGCGAAAAGCATGTTTCATGTTTTCTACAGCCCAAGAGCAAGTCATGCAGATTTTGTCATACCCTACCAAAAATTTGTCAAAAGCATCAAGAATCCAGTGACCATCGGGACAAGATTTAAAATGAAATTTGAAATGGATGAATCTCCAGAAAGAAGGTGTAGTGGTGGTATAGTGACTGGAATGAGTGATTTGGATCCCTATAAATGGCCTAAGTCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAGGATATTGAGATCAATCATCAAGATAGAGTATCTCCATGGGAGATTGATCCTTCTGCTTCTCTCCCTCCCTTGAGCATTCAATCTTCCCGGAGGCTGAAGAAACTGCGGACAGGTCTGCAAACTGAATCACCCAGTCACCTTATCACCGGGGTGGCAGCAGGAGGCAATGGGTTTATGGACTTTGAGGAGTCTGTAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAATACAAGTTTTATGTCACTATATTATGGATGTGACACAGTAACTAAGCAGCCAGAATTTGATATCAGAACTCCAAGTCATCCTAATCTTGCATCAACTGGAGCAAGAAAGATTACTGCTGCTGAGCTTATGAGGGTTCACCCTTCTAGTTATGCAGGCTTCACGGAAACTAACAGGTTTCCAAGGGTCTTGCAAGGTCAAGAAATATGTCCATTGAGGTCCCTGACAGGAGGAAAGGTTGATTTGAACCTTAGTGCTTGGGGCAAACCCAATATCAGTTGCACAAATTACAACCTGCATCAGGCAACCAAGCCTAGCTTTCACTCTTTAGGACCAGAAGTTCTTCAAAGTGCCTATTTTCCCTATGGTGATATTCACAAAGCTGGTCAAGGTAGCAGCATGTTGTGCTCTAAACCCACCAATTTCCAGAATGTGCCATTTAACACTCCTTCCACTCAGTCAGGGATCATGAGAAGTGAAGTTGGACTGTCAGGTCTCACAATCCCAAATGAGCAGAAGCTGCAGGACAACATTTCTGGTGCTGCTTCTTTAGGGGCAAACATGAGGATTCCAAATGATGACAATTTCAAGGGGAAGGCTAATGCTTGTAAACTATTTGGATTTTCCTTGTCTGGTGAAACTACCACCCAAAATTTACAGAACCCTGCTAAAAGAAGTTGCACAAAGGTTCACAAGCAAGGTAGCTTAGTTGGAAGAGCCATTGATCTCTCAAGACTGAGCAGCTACAATGACCTGTTGAGTGAACTAGAGAGACTATTTTGCATGGAAGGCCTTCTAAGAGATCCTGATAAGGGATGGAGAATCCTTTACACTGACAGTGAAAATGACATTATGGTTGTGGGAGATGACCCATGGCATGAATTCTGCGATGTGGTAACAAAGATTCATATATATACACAAGAAGAAGTGGAGAAGATGACAATTGGGATGATCAATGATGATATCCAGAGCTGTTTGGAACAGGCACCACAGATTATGGAAGCTTCAAAGTCTTCCTCAGTGGGTCAGCCAGATTCTTCTCCCACAGTAGTTAGAATCTAG 2421 0.4362 MEIDLNDAVTEVEKNATCNGDCHKGACVCCLSSPTCSSSGSSSARVSSSYLELWHACAGPLTNLPKKGNVVVYFPQGHLEQAASFSPFSPLEMPTYDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQAELAGLYLEGKEVEGLGDDEEGNGKTATKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAARPRNGLPESIVGNQSCYPNFLSSVANAISAKSMFHVFYSPRASHADFVIPYQKFVKSIKNPVTIGTRFKMKFEMDESPERRCSGGIVTGMSDLDPYKWPKSKWRCLMVRWDEDIEINHQDRVSPWEIDPSASLPPLSIQSSRRLKKLRTGLQTESPSHLITGVAAGGNGFMDFEESVRSPKVLQGQENTSFMSLYYGCDTVTKQPEFDIRTPSHPNLASTGARKITAAELMRVHPSSYAGFTETNRFPRVLQGQEICPLRSLTGGKVDLNLSAWGKPNISCTNYNLHQATKPSFHSLGPEVLQSAYFPYGDIHKAGQGSSMLCSKPTNFQNVPFNTPSTQSGIMRSEVGLSGLTIPNEQKLQDNISGAASLGANMRIPNDDNFKGKANACKLFGFSLSGETTTQNLQNPAKRSCTKVHKQGSLVGRAIDLSRLSSYNDLLSELERLFCMEGLLRDPDKGWRILYTDSENDIMVVGDDPWHEFCDVVTKIHIYTQEEVEKMTIGMINDDIQSCLEQAPQIMEASKSSSVGQPDSSPTVVRI 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi78g00091 806 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 49 767 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sebi78g00091 806 FunFam Auxin response factor 162 266 - -
Sebi78g00091 806 Gene3D - 162 266 IPR015300 -
Sebi78g00091 806 CDD B3_DNA 162 264 IPR003340 GO:0003677
Sebi78g00091 806 ProSiteProfiles PB1 domain profile. 678 760 IPR000270 GO:0005515
Sebi78g00091 806 SUPERFAMILY CAD & PB1 domains 681 757 - -
Sebi78g00091 806 Pfam B3 DNA binding domain 164 265 IPR003340 GO:0003677
Sebi78g00091 806 SUPERFAMILY DNA-binding pseudobarrel domain 157 275 IPR015300 -
Sebi78g00091 806 Gene3D - 674 767 - -
Sebi78g00091 806 FunFam Auxin response factor 673 767 - -
Sebi78g00091 806 ProSiteProfiles B3 DNA-binding domain profile. 164 266 IPR003340 GO:0003677
Sebi78g00091 806 FunFam Auxin response factor 327 400 - -
Sebi78g00091 806 Gene3D - 328 400 - -
Sebi78g00091 806 SMART B3_2 164 266 IPR003340 GO:0003677
Sebi78g00091 806 MobiDBLite consensus disorder prediction 786 806 - -
Sebi78g00091 806 Pfam Auxin response factor 290 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi78g00091 Sebi-Chr78 1956274 1961569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi78g00091 46 806 B3 DNA Binding Superfamily AT5G60450 61.438 0.0 868
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sebi78g00091 AUX_IAA 5.3e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi78g00091 - - gmx:100812909 1405.58