Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi78g00087 ATGTCCGTCATCGACATTCTCTTCCGCGTCGACGCCATATGTCACAAATATGACAAATACGACATTGATAAACAACGCCAGGTCAACGCCTATGGCGATGACGCCTTCGCTCGTCTCTACGCTGCAGTTGAATCCAGCATTCAAGAATCTCTCAGTAAATCCGAGCTTGCTTCCACGGAGAAGAACAGGGCAGTTGCTGCGGCTTTGAATGCAGAGGTTCGTCGAACCAAAGGTAGATTGATGGACGAAGTTCCTAAATTGCGCAAACTGGTGAATAAGAAGGTTAAAGGTCTCACAAATGAAGATATAGCCATTCGCCAGGATCTTGTTCTGGCGTTGCCAGAAAGAATCCAAGCAATACCAGATGGTATAACTGGAGCAGCTAATCATACTGGGGGATGGGCAGCTACCTCATCCAATCCTCAAATCAAGTTTGATTCATCAGGGGGAAATCTTGACAGTGAATATTTCCAGCAAAGTGAAGAATTCAGTCAGTTTAGACAAGAGTATGAAATGCGCAAGATGAAACAGGATGAAGGGCTTGATATCATATCAGAGGGATTGGATACCTTGAAGGATATGGCTCATGATATGAATGAGGAATTAGATCGGCAAGTCCCTTTAATGGATGAAATTGACACAAAGGTGGATAGGGCAACAGCTGATGTGAAAAACACTAACTTAAGGCTGAAGAAAACTCTCACCGAGCTGAGGTCTAGTCGAAATTTCTGCATTGACATCATTCTTCTGTGTGTTCTTCTGGGAATCCTTGCCTATTTATACAATTTGGCATATCTGTTGCTCCATTGCTCAGAGCTAAGTAAGGTCATCCATGTCTTTGATTTCTGGCATATACCAGCCTAA 864 0.4352 MSVIDILFRVDAICHKYDKYDIDKQRQVNAYGDDAFARLYAAVESSIQESLSKSELASTEKNRAVAAALNAEVRRTKGRLMDEVPKLRKLVNKKVKGLTNEDIAIRQDLVLALPERIQAIPDGITGAANHTGGWAATSSNPQIKFDSSGGNLDSEYFQQSEEFSQFRQEYEMRKMKQDEGLDIISEGLDTLKDMAHDMNEELDRQVPLMDEIDTKVDRATADVKNTNLRLKKTLTELRSSRNFCIDIILLCVLLGILAYLYNLAYLLLHCSELSKVIHVFDFWHIPA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi78g00087 287 Pfam SNARE domain 208 257 IPR000727 -
Sebi78g00087 287 CDD SNARE_Qc 176 232 - -
Sebi78g00087 287 Gene3D - 171 232 - -
Sebi78g00087 287 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 171 233 IPR000727 -
Sebi78g00087 287 PANTHER SYNTAXIN 44 252 IPR045242 -
Sebi78g00087 287 SMART tSNARE_6 166 233 IPR000727 -
Sebi78g00087 287 FunFam Putative syntaxin-71-like 171 232 - -
Sebi78g00087 287 ProSitePatterns Syntaxin / epimorphin family signature. 177 216 IPR006012 GO:0005484|GO:0006886|GO:0016020
Sebi78g00087 287 SUPERFAMILY SNARE fusion complex 166 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi78g00087 Sebi-Chr78 1873769 1876104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi78g00087 1 263 SNARE and Associated Proteins AT3G09740 68.679 2.20e-136 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi78g00087 K08506 - gmx:100817729 425.631