Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi78g00078 ATGGATAAAGGTCAACGAATTATTGGTGGTGAGTTGTGGGCTGAGCCTGCAACCGTTGTTAGAAACTGGAGTTATCACAATGTTGGGTGGCTTGAGGCCCTTCCCTTCCTCTCGTATCAGGTAATCTTCAATCATATTTTGTGCTTGATCCTTGGAATTCTGGTAACCATGTATGGCTTTCACCAATTTGATAAGATTCTTGCTGTGAAAACAATTGACAGGTTGCTTCGGGTTGATCAAAAAACAAAAAGTCGACGGACTAAGCGTGGCATCAACAATTTTCTCTCCCACGGGCTATTGACGGATGGAGAAACTGAAGGTGATGAGGTTTCATATAGTGGTGAGGCTACTAGTAACACCACCAGTGGAGATGATAATGAGGTGCAAATTTTACCCAACCGTTCTGAGGAAATTTTGACCTTCAGAGCTGAGAATGGCATGATTTGTAGGCCGTTTCCTGTTAAGGAGACTTGCAAACTTGTTCGCTCAGAGGATGAAAATGGGAACAAGATGATAAATGAGTATATTCGAGAATATAAGATTGGTTCTGGTAGCTATGGCAAAGTGGCTCTTTATCGAAGTTCTGTTGATGAAAAGCATTATGCAATTAAGGCCTTTCATAAGTCTCATTTACAGAAGCTTCGAGTTGCACCATCTGAGACTGCCATGACTGATGTTCTACGTGAGGTAATGATTATGAAAATGCTGGAACATCCTAATATAGTCAATCTGATTGAGGTGATTGATGACCCAGAGTCGGATGACTTCTACATGGTACTTGAATATGTGGAAGGCAAATGGGTTTGTGAGGGTTCAGGTCGTCCTTGTGCCTTAGGTGAAGAGACTGCTAGGAAATACTTGCGTGATATAGTCTCGGGATTAACATATCTTCATGCTCATAATATAGTTCATGGAGATATAAAACCTGATAATCTGTTAATTACTCGTCATGGCAAAGTAAAGATAGGGGATTTCAGTGTCAGCCAAGCTGTTGAGGATGGTAATGATGAACTTCGGCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAATGTTGTTTAGGCCTTACTTATCATGGTAAAGCTTCAGATACGTGGGCAGTAGGAGTTACTTTGTACTGTATGATATTGGGTGAATACCCATTTCTCGGAGACACACTTCAAGATACATATGACAAAATAGTCAATAATCCTATAGATATCCCAGATGACATTAACCCGCAGTTAAAGAATTTAATAGAAGGATTACTTTGCAAAGACCCAAAACTAAGGATGACATTGGGTGAGGTTGCGGAGCATAGTTGGGTTATTGGAAATGATGGGCCAATTGGTGAGTACTTGTGTTGGTGCAAACGCAAGAGCCTGCAGAGGGAAGACTTTGACGAGAGCAATCTGCTTTCATGA 1404 0.4152 MDKGQRIIGGELWAEPATVVRNWSYHNVGWLEALPFLSYQVIFNHILCLILGILVTMYGFHQFDKILAVKTIDRLLRVDQKTKSRRTKRGINNFLSHGLLTDGETEGDEVSYSGEATSNTTSGDDNEVQILPNRSEEILTFRAENGMICRPFPVKETCKLVRSEDENGNKMINEYIREYKIGSGSYGKVALYRSSVDEKHYAIKAFHKSHLQKLRVAPSETAMTDVLREVMIMKMLEHPNIVNLIEVIDDPESDDFYMVLEYVEGKWVCEGSGRPCALGEETARKYLRDIVSGLTYLHAHNIVHGDIKPDNLLITRHGKVKIGDFSVSQAVEDGNDELRRSPGTPVFTAPECCLGLTYHGKASDTWAVGVTLYCMILGEYPFLGDTLQDTYDKIVNNPIDIPDDINPQLKNLIEGLLCKDPKLRMTLGEVAEHSWVIGNDGPIGEYLCWCKRKSLQREDFDESNLLS 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi78g00078 467 Pfam Protein kinase domain 177 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi78g00078 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 302 314 IPR008271 GO:0004672|GO:0006468
Sebi78g00078 467 Gene3D Phosphorylase Kinase; domain 1 169 272 - -
Sebi78g00078 467 MobiDBLite consensus disorder prediction 102 125 - -
Sebi78g00078 467 SUPERFAMILY Protein kinase-like (PK-like) 171 445 IPR011009 -
Sebi78g00078 467 CDD STKc_LKB1_CaMKK 181 436 - -
Sebi78g00078 467 MobiDBLite consensus disorder prediction 111 125 - -
Sebi78g00078 467 FunFam Serine/threonine-protein kinase Ssp1 169 271 - -
Sebi78g00078 467 FunFam Serine/threonine-protein kinase GRIK2 165 466 - -
Sebi78g00078 467 ProSitePatterns Protein kinases ATP-binding region signature. 181 204 IPR017441 GO:0005524
Sebi78g00078 467 Gene3D Transferase(Phosphotransferase) domain 1 274 442 - -
Sebi78g00078 467 SMART serkin_6 175 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi78g00078 467 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 125 439 - -
Sebi78g00078 467 ProSiteProfiles Protein kinase domain profile. 175 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi78g00078 Sebi-Chr78 1685999 1691120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi78g00078 181 443 CBL-interacting serine-threonine protein kinases AT5G35410 33.840 6.44e-43 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Sebi78g00078 Pkinase 1.7e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi78g00078 K00908 - gmx:100776013 694.886