Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi78g00072 ATGAGTGCTGAGGAAAAACGTGATGCACCTTCTCGCAAACGAACAGCTTCTCTCCCAGTTCCCAAGGTTGATGATCTAATGGAGGTAGCTGATGAAAATTCACATGCTCATCATTGGAAGCGACAAAATCTTCTTCTGGAAATACCATCCAGAACAACACCAGAAGAGCTTTCTTCTTCTAAGGATTTTGTTGCAATAAGGATGCCACTGACACCAAGTCCAACTCCAACCCATAAGAAAGTGAATTTTCTTGTGACTTCTCGCTCTGTTGATGCTCCGAGTAATAACTGTCCAGGGCCTTCAGCATCAAGAGCCAAATCATCATCCATAAGAAGCATCTTACCTAAAATTGGCTTCAGGAATCGGACTTCATCAGATATTGAAAAGGCTATAACTGCAGTTCCAGAAGGTTCCTCTTCAGGTCCTCAAGAAATCAAGTCTTCAATCTCAAGATCAGTGTCCTTGTCTAAGATATTTACTCCTAAGATTAAGAGAACGTCATCATTACCAGTAGAAGAAATTGGGCGTGCTAACACAGAATCTTCTCTGAGTGGATGTATTGCTGGTTCTCCATATAGAAGAGAGACCCAGGGGACTATAGCTCGCACTCGTTCAGAGCCTGTCAACAACCAAGATAAAAGCATGAGGAAAATGGATAGGTTCTTCCGGGTTATTCCTTCCACCCCTCGAGTAAAGGAAGTGAATGAATGTTTGAACTCATCCACAGAAAAGGATACCGAAAATGATGGTGATGGTGAAGATATAGCTGAAGAGGAAGCTGTGTGTAGAATTTGTCTGGTTGATCTATGTGAAGGAGGTGAGACATTCAAGCTGGAATGTAGCTGCAAAGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTGTTAAGTGGTTTAGTATCAAAGGTAATAAGACCTGTGATGTGTGCAAGGAGGAGGTTCGGAACCTCCCTGTCACTCTCTTACGGATCCAGACTGTTCGAACTCAGAATAATGGAGCAAGGTCTACGCAGGAAGATGACTTCAGGATTTGGCAGGAACTGCCGGTGCTTGTCATTGTCAGCATGCTTGCTTATTTCTGTTTCCTTGAGCAGCTATTGGTTGGAAAAATGGGAACCAAAGCAATTTTCATATCTCTTCCATTTTCATGTGTACTTGGTCTACTCTCCTCAATGACATCATCAACAATGGGTAGGTTCGTGAAGAGCAGCAAGTTCATCTGGATTTATGCAGCTGCCCAATTTGCTTTGGTGGTTCTCTTCGCACATATATTTTACTCCATGTTTGGTGTTGAAAAATCAAGTGAGTCAAGTCTCACATTGGTTAGGAATAGGTTAAGTAAGGTTATTGTAAGTGCAATGACCCATATATTCATTCCCTTAAGGTTGAGGGTCAAGATGGGGTGTCAAAGTGGTCCACTCGGCTTGAGGAACAAGGCAACCTCCCCTTCACCTAAAGATTTGGTACATATGAAACTCTGTGCTCTCAAGTCTCAAGTTTTTAAAGCCAATTTCATGCATGCTCAATTGCCAAAGGCAGAGGTTGGTAAGCAAGCAGTTCTGTCAATCCTTCTTGCATCATTTGCTGGGTTTGGTGTAGTGATGAGTGGAAGTTCAATTCTTGTGGAGTTAGTCAGATGGAAAAGAAGATGGCAGGCTTTATCAGAGCATCAGAATCAGCATGCTTCTCAAGTAATGACACAAGATGGACAATATTCTCATTCAGGCCTTCCCAACAGCAGTCAAACTGCTGTGTAA 1755 0.4274 MSAEEKRDAPSRKRTASLPVPKVDDLMEVADENSHAHHWKRQNLLLEIPSRTTPEELSSSKDFVAIRMPLTPSPTPTHKKVNFLVTSRSVDAPSNNCPGPSASRAKSSSIRSILPKIGFRNRTSSDIEKAITAVPEGSSSGPQEIKSSISRSVSLSKIFTPKIKRTSSLPVEEIGRANTESSLSGCIAGSPYRRETQGTIARTRSEPVNNQDKSMRKMDRFFRVIPSTPRVKEVNECLNSSTEKDTENDGDGEDIAEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAVKWFSIKGNKTCDVCKEEVRNLPVTLLRIQTVRTQNNGARSTQEDDFRIWQELPVLVIVSMLAYFCFLEQLLVGKMGTKAIFISLPFSCVLGLLSSMTSSTMGRFVKSSKFIWIYAAAQFALVVLFAHIFYSMFGVEKSSESSLTLVRNRLSKVIVSAMTHIFIPLRLRVKMGCQSGPLGLRNKATSPSPKDLVHMKLCALKSQVFKANFMHAQLPKAEVGKQAVLSILLASFAGFGVVMSGSSILVELVRWKRRWQALSEHQNQHASQVMTQDGQYSHSGLPNSSQTAV 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi78g00072 584 SUPERFAMILY RING/U-box 258 313 - -
Sebi78g00072 584 ProSiteProfiles Zinc finger RING-CH-type profile. 254 316 IPR011016 GO:0008270
Sebi78g00072 584 MobiDBLite consensus disorder prediction 1 22 - -
Sebi78g00072 584 Pfam RING-variant domain 262 309 IPR011016 GO:0008270
Sebi78g00072 584 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 317 IPR013083 -
Sebi78g00072 584 MobiDBLite consensus disorder prediction 561 584 - -
Sebi78g00072 584 CDD RING_CH-C4HC3_MARCH 262 310 - -
Sebi78g00072 584 PANTHER OS02G0165000 PROTEIN 17 431 - -
Sebi78g00072 584 SMART ringv_2 261 310 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi78g00072 Sebi-Chr78 1532653 1536976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi78g00072 251 316 C3H Transcription Factor Family AT2G37950 46.269 4.93e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi78g00072 - - gmx:100815599 551.977