Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi78g00057 ATGCTAAGGACGAATAGGCCTTTAACTTCAGGAGCAGAGGGAAGGATTCTGAGTTTAGAGAACATGGCCATGGCTGTGGCTGAACACAGAGAAAGCAGCATTGACAGGCACCTTGATTCTTCTGGGAAATATGTGCGCTACACCGCGGAACAGGTTGAAGCTCTTGAACGGGTTTACACAGAGTGCCCCAAACCCAGTTCCTTGCGAAGGCAGCAACTGATCCGAGAGTGCCCCGTTCTCGCAAACATCGAGCCTAAGCAGATCAAAGTTTGGTTCCAGAATCGCAGGTGTAGAGAGAAGCAGAGAAAAGAGGCTTCTCGGCTTCAAGCTGTGAACCGGAAACTAACAGCAATGAACAAGTTGTTGATGGAGGAAAATGATCGGTTGCAGAAACAGGTTTCACAGCTGGTATGCGAGAATGGGTTCATGAAGCAGCAATTGCATACACCTTCAGCAGCAGGAACTACTGATGGCAATGGTGATTCGGTGGTTACTACTCCTCAGAATTCTATGAGAGATGCTAATAACCCTGCTGGATTCCTATCAATTGCAGAGGAGATGTTGGCAGAGTTCCTTTCAAAGGCTACGGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCTGCTCGAGCCTGTGGTCTTGTTAGTTTAGAACCTAAGAAGATTGCGGAGATCCTAAAAGATCGTCCATCTTGGTTTCGGGATTGTCAGAGTCTAGAAGTTTTCACAATGTTCCCAGCTGGAAATGGAGGGACAATTGAACTTGTTTACACACAGACATATGCTCCAATGACACTGGCTCCTGCCCGGGATTTCTGGACTCTAAGATACACTACATATTTGGACAATGGCAGTCTTGTGTTTGTGAGGGCTGAAATGCTCCCTAGTGGCTACTTGATTCGACCATGTGACGGTGGAGGATCAATCATCCACATTGTAGACCACCTAAACCTACAGGCATGGAGTGTGCCAGAAGTGATCCGACCACTATATGAATCATCAAAAATGGTAGCTCAGAGAATGACAATTGCAGCACTTCGCTACATCAGGCAAATAGCTCAAGAAACAAGTGGTGAAGTGGTATATGGCTTGGGTAGGCAGCCCGCTTCTCTGAGAACTTTTAGCCAAAGGTTGAGCAGAGGCTTCAATGATGCTGTCAATGGATTCAATGATGATGGCTGGTCTGTGCTGAACTGTGATGGCGCTGAGGATGTTATTATTGCTGTTAATTCAACCAAGAATTTGAGTGGCACTTCTAATCCAGCAAGTTCCCAGACACTGCTTGGAGGAATTCTCTGTGCGAAAGCTTCTATGTTAATCCAAAACATCCCTCCTGCAGTTTTAATTCGCTTTCTGAGGGAACATCGCTCAGAATGGGCTGATTTTAATGTTGATGCCTATTCTGCTGCATCACTTAAAGCTGGCTCCTATGCCTATCCGGGAATGAGGCCTATGAGGTTCACTGGCAGTCAAATGATCATGCCTCTTGGACATACAATTGAAAATGAAGAGATGCTAGAAGTTATCCGGCTTGAAGGTCACTCTCTTGCTCAAGAAGATGCTTTTGTTTCTAGGGACATTCATCTCTTACAGTTATGTAGTGGAATTGATGAGAATGCTGTGGGGGCTTGTGCTGAGCTCATATTTGCTCCAATTGATGAAATGTTCCCGGATGATGCTCCATTGGTGCCTTCTGGTTTCCGCATTATCCCGTTGGATTCACAACCAGGTGATAAAAAGGACACAATGACAACAAATCGAACCTTGGATCTAACATCTGGTCTTGAAGTAGGCCCAGCAACAAATCATCCTGCTGGAGAGGCATCATCATATCATAACAATCGATCAGTGTTGACTATTGCCTTCCAATTTCCCTTCGAGAGCAATCTGCAGGATAATGTTGCAGTCATGGCACGTCAGTATGTCCGTAGTGTAATTTCCTCCGTGCAGACGGTTGCCATGGCTATATCTCCATCTGGTGTAAACCCAGCTGTTGGAGCAAGACTCTCTTCTGGCTCTCCAGAAGCTCTTACACTAGCTCAATGGATCTGCCGAAGTTATAGTTATTATTTGGGGACGGAACTGCTGAGATCTGACTCTCTTCTTGGTGATTTGGTACTGAAACATTTGTGGCATCATCAGGATGCTATTTTGTGCTGTTCTATGAAGTCAATGCCCGTGTTCATCTTTGCAAACCAGGCAGGTCTTGACATGTTAGAAACAACTCTAGTGGCTTTACAAGACATCACATTGGATAAAATATTCGACGAGTCTGGACGCAGGGCATTGTTTGCAGATTTTGCCAAGTTAATGCAGCAGGGGTTTGCTTATCTGCCAGCTGGGATCTGCATGTCCACAATGGGACGGCATGTTTCATATGACCAAGCCATCGCATGGAAAGTGCTTGCTGAAGAAGATAACAGTGTTCATTGCTTAGCTTTCTCTTTCATAAATTGGTCATTTGTATGA 2529 0.4567 MLRTNRPLTSGAEGRILSLENMAMAVAEHRESSIDRHLDSSGKYVRYTAEQVEALERVYTECPKPSSLRRQQLIRECPVLANIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVCENGFMKQQLHTPSAAGTTDGNGDSVVTTPQNSMRDANNPAGFLSIAEEMLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPKKIAEILKDRPSWFRDCQSLEVFTMFPAGNGGTIELVYTQTYAPMTLAPARDFWTLRYTTYLDNGSLVFVRAEMLPSGYLIRPCDGGGSIIHIVDHLNLQAWSVPEVIRPLYESSKMVAQRMTIAALRYIRQIAQETSGEVVYGLGRQPASLRTFSQRLSRGFNDAVNGFNDDGWSVLNCDGAEDVIIAVNSTKNLSGTSNPASSQTLLGGILCAKASMLIQNIPPAVLIRFLREHRSEWADFNVDAYSAASLKAGSYAYPGMRPMRFTGSQMIMPLGHTIENEEMLEVIRLEGHSLAQEDAFVSRDIHLLQLCSGIDENAVGACAELIFAPIDEMFPDDAPLVPSGFRIIPLDSQPGDKKDTMTTNRTLDLTSGLEVGPATNHPAGEASSYHNNRSVLTIAFQFPFESNLQDNVAVMARQYVRSVISSVQTVAMAISPSGVNPAVGARLSSGSPEALTLAQWICRSYSYYLGTELLRSDSLLGDLVLKHLWHHQDAILCCSMKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRRALFADFAKLMQQGFAYLPAGICMSTMGRHVSYDQAIAWKVLAEEDNSVHCLAFSFINWSFV 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi78g00057 842 Pfam START domain 307 370 IPR002913 GO:0008289
Sebi78g00057 842 Pfam START domain 183 306 IPR002913 GO:0008289
Sebi78g00057 842 ProSiteProfiles START domain profile. 173 381 IPR002913 GO:0008289
Sebi78g00057 842 CDD homeodomain 43 103 IPR001356 GO:0003677
Sebi78g00057 842 CDD bZIP 95 134 - -
Sebi78g00057 842 Gene3D - 37 109 - -
Sebi78g00057 842 SMART HOX_1 40 106 IPR001356 GO:0003677
Sebi78g00057 842 SUPERFAMILY Homeodomain-like 39 106 IPR009057 -
Sebi78g00057 842 SMART START_1 182 372 IPR002913 GO:0008289
Sebi78g00057 842 Pfam Homeodomain 43 101 IPR001356 GO:0003677
Sebi78g00057 842 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 40 842 IPR044830 GO:0003700
Sebi78g00057 842 ProSiteProfiles 'Homeobox' domain profile. 38 102 IPR001356 GO:0003677
Sebi78g00057 842 MobiDBLite consensus disorder prediction 148 171 - -
Sebi78g00057 842 Coils Coil 98 139 - -
Sebi78g00057 842 FunFam Homeobox-leucine zipper protein REVOLUTA 43 98 - -
Sebi78g00057 842 Gene3D - 209 377 IPR023393 -
Sebi78g00057 842 Pfam MEKHLA domain 698 841 IPR013978 -
Sebi78g00057 842 SUPERFAMILY Bet v1-like 182 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi78g00057 Sebi-Chr78 1221871 1227517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi78g00057 22 842 Homeobox Transcription Factor Family AT5G60690 79.034 0.0 1384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi78g00057 START 1.7e-35 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi78g00057 K09338 - gmx:100804870 1463.74