Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi78g00041 ATGGGGTTTAGTAATCCAAGATCTGAAAGGTTTGAAGATGATCCTGAAGTAGCAAAAAATGGTGACAATGGGAAGGGGATTAAGCTTAAATACAACATTGATGGAACACAAATACCTGAGCCTAGTCGCAAAACGGTTCAAAAGAAGGTGACAGGGAAGAAAGGAAAGTTCTTGAAAGTGGTTCAAGATGAAGTGTGCATTGATATTGGAATAACACTTGAAGTGACCCTCACAATTATCAGATCAGTGGTGGATGTCTTTTACATGATTCAGATTTTGATGAAGTTTCGTACAGCTTATGTTGCTCCTTCTTCCCAGGTATTTGGGAGAGGAGAACTTGTTTTAGGCTATTCTAAGATTGCAGTTAGGTACCTTCGCAAGGGTTTCTGGGTTGATGATGCTCTCAGGGTGTCTTGGTTTATAGCTAGTAATATCACAAATTTATGCTCACCAGACGCTGACTTTTATCAATTTGGTATATATGTTGATGCTATGACTTCTGAAGTTACTTCCTCGGCATTCTTTAATAAGTACTTCTATTGTCTCTGGTGGGGCCTAAGGAATTTGAGTTCTTTGGGACAAGGCCTTCTTACTAGCACTTTTGTTGGAGAAATAATGGTAGCCATTGTTGTTGCAACCCTTGGATTGGTTCTTTTTGCGTTGCTGATTGGTAATATGCAGACATACCTACAATCAATAACAGTTCGGCTAGAAGAGTGGAGGGTGAAAAGAACTGATACAGAACAATGGATGCATCACAGGCAACTACCACCAGAGCTAAGAGAATCTGTGCGTAAATATGATCAATATAAATGGGTGGCTACCCGAGGTGTAGATGAAGAAACTATTCTCAAAGGACTTCCATTGGATCTCAGGAGAGACATCAAGCGCCACCTTTGTCTTGAACTAGTTCGAGGAGTTCCATTGTTTGATCAAATGGATGAGAGGATGCTAGATGCAATATGTGAAAGGCTAAAGCCTGCATTGTGCACTGAAGGGACCTATCTTGTTCGTGAGGGTGATCCTGTGAATGAGATGCTCTTCATAATTAGAGGCCATCTTGATTCATACACCACAAATGGAGGCCGTGCTGGATTCTTCAACTCATGCCGTATTGGGCCAGGTGATTTCTGTGGTGAAGAGCTATTAACATGGGCCTTAGACCCAAGACCAAGTGTGATACTCCCATCTTCCACTAGAACAGTTAAAGCCATATCAGAAGTAGAGGCCTTTGCACTCATAGCTGAAGACTTAAAATTTGTTGCATCTCAATTTAGAAGACTGCACAGTAAACAACTGAGGCATAAATTCAGGTTTTACTCACACCAATGGAGAACATGGGCTGCTTGTTTCATTCAAGCTGCTTGGAGACGGCACAAGAAAAGGAAAGAAGCTGCTGAATTAAGGGCCAGGGAGAATCTTGCAGCTTCTGAGCCTGAAACACCAACATCTGGTTCAGGCTTTGTTATGTATGCAAAACCAAAAAGGGTGGGGAGGAGCACTAGGAAAGGTGTCAATATGCATTCTGGGACAGATTCTGGGGTAGTTAGTTCTTTGCAGAAGCCAGCAGAACCAGACTTTGATGAATAG 1590 0.4201 MGFSNPRSERFEDDPEVAKNGDNGKGIKLKYNIDGTQIPEPSRKTVQKKVTGKKGKFLKVVQDEVCIDIGITLEVTLTIIRSVVDVFYMIQILMKFRTAYVAPSSQVFGRGELVLGYSKIAVRYLRKGFWVDDALRVSWFIASNITNLCSPDADFYQFGIYVDAMTSEVTSSAFFNKYFYCLWWGLRNLSSLGQGLLTSTFVGEIMVAIVVATLGLVLFALLIGNMQTYLQSITVRLEEWRVKRTDTEQWMHHRQLPPELRESVRKYDQYKWVATRGVDEETILKGLPLDLRRDIKRHLCLELVRGVPLFDQMDERMLDAICERLKPALCTEGTYLVREGDPVNEMLFIIRGHLDSYTTNGGRAGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRHKKRKEAAELRARENLAASEPETPTSGSGFVMYAKPKRVGRSTRKGVNMHSGTDSGVVSSLQKPAEPDFDE 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi78g00041 529 MobiDBLite consensus disorder prediction 504 518 - -
Sebi78g00041 529 ProSiteProfiles IQ motif profile. 445 473 IPR000048 GO:0005515
Sebi78g00041 529 MobiDBLite consensus disorder prediction 471 529 - -
Sebi78g00041 529 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 58 132 - -
Sebi78g00041 529 Gene3D Jelly Rolls 307 427 IPR014710 -
Sebi78g00041 529 SUPERFAMILY Voltage-gated potassium channels 172 272 - -
Sebi78g00041 529 Pfam Cyclic nucleotide-binding domain 332 419 IPR000595 -
Sebi78g00041 529 SMART cnmp_10 309 440 IPR000595 -
Sebi78g00041 529 Gene3D Helix hairpin bin 237 300 - -
Sebi78g00041 529 ProSiteProfiles cAMP/cGMP binding motif profile. 309 406 IPR000595 -
Sebi78g00041 529 FunFam Cyclic nucleotide-gated ion channel 1 236 300 - -
Sebi78g00041 529 SUPERFAMILY cAMP-binding domain-like 239 435 IPR018490 -
Sebi78g00041 529 CDD CAP_ED 309 440 IPR000595 -
Sebi78g00041 529 Pfam Ion transport protein 171 236 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Sebi78g00041 529 MobiDBLite consensus disorder prediction 7 23 - -
Sebi78g00041 529 MobiDBLite consensus disorder prediction 1 25 - -
Sebi78g00041 529 FunFam Cyclic nucleotide-gated ion channel 1 307 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi78g00041 Sebi-Chr78 937906 941585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi78g00041 131 528 Ion Channels AT2G28260 75.871 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi78g00041 K05391 - gmx:100811847 655.595