Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi78g00040 ATGGCATTTATAGATGAACCTTCTGATACTGGCCTAAACAAGTGGAGATGTAGATGTTCTTCTTTCCAAGGGAACCAGAGATACTCTCTTGCTAATTGTTCTAAGTCATGTGATTGCCATTCAGGTATAGTGGATGCTTTCAGAAGGCCTCTTTATTATTTGGGAGCCAAAAAGAAACTTTTCATGGAAATTGAACTATTATCTAGGCTTCACCATTGTCATCTGGTGCCACTGATTGGATATTGCTCAGAATTAAAAGGAAAAAATGTTCAGAGGTTACTAGTGTTTGACTACATGAGTAATGGCAATTTGAGGGACCGTTTAGATGGAATTTTTGGAAAAAACATGGATTGGGCTACTCGTGTTACAATTGCATTAGGAGCTGCAAGGGGTTTGGAGTATCTTCATGAGGCAGCTGCTCCTAGAATTCTGCACAGAGATGTCAAATCAACAAATATTCTTCTGGATAAAAATTGGCAAGCAAAAATAACTGATCTTGGTATGGCTAAAAACTTGATAGCTGATGACCTCCCCAGTTGTTCAGATTCTCCAGCAAGAATGAAGGGGACATTTGGCTATTTTGCACCTGAGTATGCAATTATAGGGAGAGCCTCTCTTGAGTCTGATGTCTTCAGTTTTGGGGTGGTTCTTCTTGAGCTTATCAGTGGCCGGCAACCCATCCATAAATCTGCTGGCAAAGAAGAGAGCCTTGTTATATGGGCTACTCCTCGCTTAGAGGATAGTAGGCGAGTAATAACAGAATTGGCTGATCCACAATTGAAAGGAAAATTCCCAGAAGAAGAGGTGCAGATAATGGCATACTTAGCAAAGGAATGTTTGCTTTTAGATCCTGACACTAGACCAACTATGAGTGAAGTTGTTCATATTCTTTCAAGTATTTCACCAGGAAGATCTAGAAGGAGAAGAAGCATTCCAGTGGGGCTTTTTCAGGAAGCAGAGGACGTGGACAAGCAAAAACAAGCTCCATTGAGTAGATTTCCAGCTTGTAATTTATTGCCACTAGGTATTGAGAACAATGTTAGTGTTGGAAATGAAAATAAAGATGTAGATAAAGTTTCAACTGAGTATAGGGAGAGTTTGATCCTCTTGACTTCAAAAGGTGAGAAGAACTGGCATGCATCAGAAGAGGAAATGGTAGACCTAACAGAACCTCGGTTTGAATCATTTTGCATGGCAAACGTCAACAATTTCCCTTGA 1218 0.4015 MAFIDEPSDTGLNKWRCRCSSFQGNQRYSLANCSKSCDCHSGIVDAFRRPLYYLGAKKKLFMEIELLSRLHHCHLVPLIGYCSELKGKNVQRLLVFDYMSNGNLRDRLDGIFGKNMDWATRVTIALGAARGLEYLHEAAAPRILHRDVKSTNILLDKNWQAKITDLGMAKNLIADDLPSCSDSPARMKGTFGYFAPEYAIIGRASLESDVFSFGVVLLELISGRQPIHKSAGKEESLVIWATPRLEDSRRVITELADPQLKGKFPEEEVQIMAYLAKECLLLDPDTRPTMSEVVHILSSISPGRSRRRRSIPVGLFQEAEDVDKQKQAPLSRFPACNLLPLGIENNVSVGNENKDVDKVSTEYRESLILLTSKGEKNWHASEEEMVDLTEPRFESFCMANVNNFP 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi78g00040 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Sebi78g00040 405 Pfam Protein kinase domain 58 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi78g00040 405 Gene3D Phosphorylase Kinase; domain 1 53 99 - -
Sebi78g00040 405 SUPERFAMILY Protein kinase-like (PK-like) 56 297 IPR011009 -
Sebi78g00040 405 SMART serkin_6 28 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi78g00040 405 Gene3D Transferase(Phosphotransferase) domain 1 100 311 - -
Sebi78g00040 405 ProSiteProfiles Protein kinase domain profile. 1 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi78g00040 405 PANTHER OS01G0750732 PROTEIN 61 302 - -
Sebi78g00040 405 FunFam receptor-like serine/threonine-protein kinase NCRK 99 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi78g00040 Sebi-Chr78 922559 927571 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi78g00040 63 401 Receptor kinase-like Gene Family AT2G28250 61.516 5.69e-134 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Sebi78g00040 Pkinase 7.8e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi78g00040 - - gmx:100499641 575.089