Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi78g00038 ATGATGTTACCACATGAGGGAGAGAAGGGGAAGAGCAGCGAGTTGGACCCCTTGAAGTGGGAGGCGGCTGCGGAGTCGTTGAAGGGGAGTCATTTGGAGGAAGTGAAGAGGATGGTGGAGGATTATAGGAAGGAGGCGGTGAGGGTGGGAGGCGAGACGTTGACGGTGGGGGAGGTGGTGGCGGTGGCAGAGAGGCGGGTGGCGGTGGAACTGAACGAGGCGGCGAGGGTGAGAGTGAAGGCAAGCAGTGAGTGGGTGATGGAAAGCATGCACAATGGGACTGATTGTTATGGGGTCACTACTGGCTTTGGTTCCACCTCACATAGAAGAACCACACAGGAAGCATGCCATACTTTGCCACGCACTGCAACAAGAGCTGCAATGCTGGTAAGAGTGAATACCCTCCTTCAAGGCTACTCTGGCATTAGATATGAGATACTAGAAGCCATTGCAAAATTGCTCAATCACAGCATCACACCATGCTTGCCATTGCGTGGTTCAATTTCAGCCTCAGGGGACTTGGTTCCATTTTCATACATATCTGGACTCCTGACTGGGAGGCCAAATTCAAAGGCCATTGGACCCAATGGTGACTCCCTAAGTGCTGCAGAAGCTTTCCATGTAGCTGGTATTAGTGGGGGCTGCTTTAAGTTGCAACCCAAGGAGGGTCTTGCACTTGTTAATGGAACTGGGGTTGGAGCTGGTTTAGCTTCTATAGTTCTATTTGAGGCTAACATCTTAACCATCTTATCTGAAGTCATGTCTGCCATTTTTGCTGAAGTCATGCAAGGAAAGCCAGAGTTTACAGACCATTTGACTCACAAATTGAAGCACCATCCTGGTCAGATTGAGGCTGCAGCAGTTATGGAACATATCTTGCATGGAAGTGCTTATGTTAAAGCAGCACAAAAGTTACATGAGATAGATCCTTTCCGAAAGCCTAAGCAAGATAGATATGCTCTTAGGACTTCACCTCAATGGTTAGGTCCTCAAATTGAAGTTATTCGGTTATCAACAAAATCAATTGAAAGGGAGATCAATTCTGTGAATGATAACCCTTTGATTGATGTATCAAGGAACAAAGCTTTACATGGTGGCAATTTTCAGGGCACCCCAATAGGGGTTTCTATGGACAACACGAGATTAGCTTTGGCTGCCATTGGAAAACTCCTTTTTGCTCAAATGTCTGAGTTGGTTAATGATTTCTACAATAATGGTTTGCCTTCAAATCTCTCAGGAGGTCATTGTCCAAGCTTGGACTATGGATTTAAGGGTGGTGAGATAGCAATGGCTGCATACTGTTCTGAGCTTCAGTATCTAGCAAACCCTGTTACTAATCACGTGCAAAGTGCAGAACAACACAATCAAGATGTGAATTCTCTGGGTCTAATCTCTGCAAGGAAAACAGCTGAAGCTGTTGAAATATTAAAGCTCATGTCTTCAACTTACCTGATTGCTCTTTGTCAAGCAATAGATTTGAGGCATTTGGAGGAGAATCTAAAGAACACAGTTAAGAATACGGTGAGCCAAGTAGCTAGAAAAGTCCTGACTGTGGGTGTCAATGGGGAGGTTCATCCTTCCAAGTCCTGTGAGAAAGATTTGCTCAAAGTGGTTGATTGTGAGTATGTATTTGCTTACATTGATGACCCTTGCAATGCTACATACCCACTTATGCAAAAACTTAGGCAAGTGCTCGTGGAACATGCATTGAGGACTAATAATGGTTTGAAAAGTATAAATGCTTCCATCATTCTGAAGATTGGTGCCTTCGAGGAGGAATTGAAGAGAGTCTTACCCAAAGATGTTCAATCTACAAGGAATGCCTTTGAAAAGGGGAGGTCAGTGAGTCCTAACAAAATAAAGGAATGCAGGTCCTACCCGCTGTACAAGTTTGTCAGAGAAGAATTGGGGACAGAGTTCTTAACGGGAGAGAAAATGAAATCCCCTGGAGAAGATTTTGATGAAGTTTTTAATGCAATTACTCAGGGAAAAATAATAGATCCAATGTTTGCATGCCTCAAGGATTGGGATGGTACTCCTCTTCCTATATGTTGGAGCTCCTCATAG 2067 0.4456 MMLPHEGEKGKSSELDPLKWEAAAESLKGSHLEEVKRMVEDYRKEAVRVGGETLTVGEVVAVAERRVAVELNEAARVRVKASSEWVMESMHNGTDCYGVTTGFGSTSHRRTTQEACHTLPRTATRAAMLVRVNTLLQGYSGIRYEILEAIAKLLNHSITPCLPLRGSISASGDLVPFSYISGLLTGRPNSKAIGPNGDSLSAAEAFHVAGISGGCFKLQPKEGLALVNGTGVGAGLASIVLFEANILTILSEVMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAVMEHILHGSAYVKAAQKLHEIDPFRKPKQDRYALRTSPQWLGPQIEVIRLSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALAAIGKLLFAQMSELVNDFYNNGLPSNLSGGHCPSLDYGFKGGEIAMAAYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVEILKLMSSTYLIALCQAIDLRHLEENLKNTVKNTVSQVARKVLTVGVNGEVHPSKSCEKDLLKVVDCEYVFAYIDDPCNATYPLMQKLRQVLVEHALRTNNGLKSINASIILKIGAFEEELKRVLPKDVQSTRNAFEKGRSVSPNKIKECRSYPLYKFVREELGTEFLTGEKMKSPGEDFDEVFNAITQGKIIDPMFACLKDWDGTPLPICWSSS 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi78g00038 688 Pfam Aromatic amino acid lyase 54 506 IPR001106 -
Sebi78g00038 688 Gene3D - 8 230 IPR024083 -
Sebi78g00038 688 Gene3D - 497 618 IPR023144 -
Sebi78g00038 688 SUPERFAMILY L-aspartase-like 16 684 IPR008948 GO:0003824
Sebi78g00038 688 NCBIfam phenylalanine ammonia-lyase 16 674 IPR005922 GO:0005737|GO:0006559|GO:0016841
Sebi78g00038 688 FunFam Phenylalanine ammonia-lyase 497 618 - -
Sebi78g00038 688 CDD PAL-HAL 52 494 IPR001106 -
Sebi78g00038 688 PANTHER HISTIDINE AMMONIA-LYASE 16 684 IPR001106 -
Sebi78g00038 688 FunFam Phenylalanine ammonia-lyase 231 551 - -
Sebi78g00038 688 Gene3D Fumarase/aspartase (Central domain) 232 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi78g00038 Sebi-Chr78 859298 861980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi78g00038 16 684 Monolignol Biosynthesis Gene Families AT2G37040 73.555 0.0 1081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi78g00038 K10775 - qsa:O6P43_028391 1080.86