Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi78g00010 ATGTCACACCAAGGCGAATCATCGGACTCGAAATCGGGGAAGAAGGACTACTCCACCGCGATTCTTGAGCGGAAAAAATCGCCGAACAGGCTCGTCGTCGATGAGGCCGTCAACGACGACAACTCCGTCGTCTCCATGCACCCCGAAACCATGGAAAAGCTTCAGCTTTTCCGAGGCGACACTATCCTCATCAAGGGCAAGAAACGGAGGGATACTATTTGTATAGCTCTTGCTGATGATACCTGTGAGGAGCCCAAGATCAGGATGAACAAAGTTGTGAGATCAAATTTGCGAGTTCGGCTTGGAGATGTTGTGTCTGTGCACCAGTGCCCGGATGTCAAGTATGGGAAACGTGTGCACATCCTGCCTATTGATGATACCATTGAAGGTGTCACTGGCAATCTGTTTGATGCTTTCTTGAAACCTTATTTCTTGGAGGCTTATCGTCCTGTCAGAAAAGGAGATCTATTTCTTGTCCGGGGAGGGATGAGAAGTGTAGAGTTCAAGGTCATTGAAACTGATCCTGGGGAGTATTGTGTGGTTGCTCCAGACACTGAAATCTTTTGTGAGGGGGAACCTTTGAAAAGAGAGGATGAAGAAAGGTTGGATGAAGTTGGGTATGATGATGTGGGTGGTGTCAGGAAGCAAATGGCACAGATTCGTGAATTGGTTGAGCTTCCATTGAGGCATCCACAACTTTTTAAATCAATTGGCGTGAAACCACCCAAAGGAATTTTACTATATGGACCCCCTGGTTCTGGGAAGACATTAATAGCAAGGGCTGTTGCTAATGAAACTGGAGCTTTCTTCTTTTGTATTAATGGACCAGAGATTATGTCCAAGCTGGCTGGAGAGAGTGAAAGCAATCTCAGGAAAGCATTTGAAGAGGCTGAAAAGAATGCACCATCTATCATCTTTATTGATGAAATTGATTCTATTGCACCCAAGCGGGAGAAGACACATGGTGAAGTTGAAAGGAGAATTGTTTCACAACTTTTGACTCTTATGGATGGATTAAAATCTCGGGCCCATGTTATTGTTATTGGAGCTACTAATCGTCCGAATAGCATTGACCCAGCATTGAGAAGGTTTGGTAGATTTGATAGGGAAATTGATATTGGTGTTCCTGATGAAGTTGGGCGACTAGAAGTCCTTCGCATACATACCAAAAACATGAAGCTCTCTGATGATGTTGATTTAGAGAGAATTGCAAAAGATACTCATGGGTATGTTGGAGCTGACCTTGCTGCCCTTTGCACTGAAGCTGCTTTGCAATGCATTAGGGAGAAGATGGATGTCATTGACTTAGAGGATGAGACCATTGATGCTGAAATACTGAATTCTATGGCAGTTACAAATGAGCATTTCCAGACTGCACTTGGAACAAGCAACCCATCAGCTTTACGTGAAACTGTTGTTGAGGTGCCTAATGTCAGTTGGGATGACATTGGAGGCCTTGAGAATGTCAAACGTGAACTGCAAGAGACTGTTCAATATCCCGTTGAGCACCCAGAAAAGTTTGAGAAATTTGGCATGTCACCGTCAAAAGGAGTCCTCTTCTATGGTCCTCCAGGATGTGGGAAAACTTTGTTAGCCAAAGCAATTGCTAATGAATGTCAAGCTAACTTCATCAGTGTGAAAGGCCCAGAATTGCTTACAATGTGGTTTGGTGAAAGTGAAGCCAATGTTCGAGAAATTTTTGACAAGGCTAGACAATCAGCTCCATGTGTCCTCTTCTTTGATGAGCTTGACTCCATTGCTACTCAGAGAGGAAGCAGTGTTGGGGATGCTGGTGGTGCTGCAGACAGAGTTTTAAATCAACTTCTGACTGAAATGGATGGCATGCCTGACATCATTGATCCAGCACTTCTTCGCCCAGGCCGTCTGGATCAATTGATCTATATTCCTCTTCCTGATGAGGATTCCCGTCATCAAATCTTTAAGGCCTGCTTGAGGAAGTCACCTATCTCAAAAGATGTTGATTTGAGAGCATTGGCTAGGTATACTCAAGGGTTCAGTGGTGCTGATATTACAGAAATATGCCAGCGAGCATGCAAATATGCTATAAGAGAAAACATAGAAAAGGACATAGAGCGGGAGAGGAGGAGAAGGGAAAACCCTGAGGCCATGGATGAAGACGTTGTTGACGAAGAAGTTGCAGAGATCAAGGCAGCTCATTTTGAGGAGTCAATGAAGTTTGCACGTAGGAGTGTCAGTGATGCTGATATACGCAAATACCAGGCATTTGCTCAGACCTTACAGCAATCCAGGGGGTTTGGAAGTGAATTTAGGTTTCCAGAGACTGGAGCTACGACTACTGGATCTGACCCCTTTGCAACTTCTGCTGGTGGAGCTGATGAAGATGATCTGTATAGTTAG 2379 0.4451 MSHQGESSDSKSGKKDYSTAILERKKSPNRLVVDEAVNDDNSVVSMHPETMEKLQLFRGDTILIKGKKRRDTICIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPLKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPISKDVDLRALARYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRENPEAMDEDVVDEEVAEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPETGATTTGSDPFATSAGGADEDDLYS 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi78g00010 792 CDD RecA-like_CDC48_r2-like 489 635 - -
Sebi78g00010 792 MobiDBLite consensus disorder prediction 759 779 - -
Sebi78g00010 792 Gene3D - 468 637 IPR027417 -
Sebi78g00010 792 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 466 IPR027417 -
Sebi78g00010 792 SUPERFAMILY Cdc48 domain 2-like 112 204 IPR029067 -
Sebi78g00010 792 Gene3D - 113 209 - -
Sebi78g00010 792 MobiDBLite consensus disorder prediction 8 23 - -
Sebi78g00010 792 NCBIfam CDC48 family AAA ATPase 31 754 IPR005938 GO:0016787
Sebi78g00010 792 FunFam Transitional endoplasmic reticulum ATPase 7 112 - -
Sebi78g00010 792 PANTHER AAA-FAMILY ATPASE 400 756 - -
Sebi78g00010 792 FunFam Cell division control 48 376 467 - -
Sebi78g00010 792 Gene3D - 7 112 - -
Sebi78g00010 792 FunFam Transitional endoplasmic reticulum ATPase 468 637 - -
Sebi78g00010 792 MobiDBLite consensus disorder prediction 1 23 - -
Sebi78g00010 792 FunFam Transitional endoplasmic reticulum ATPase 206 374 - -
Sebi78g00010 792 MobiDBLite consensus disorder prediction 759 792 - -
Sebi78g00010 792 CDD RecA-like_CDC48_r1-like 209 374 - -
Sebi78g00010 792 Gene3D - 376 467 - -
Sebi78g00010 792 Pfam AAA+ lid domain 659 699 IPR041569 -
Sebi78g00010 792 Pfam AAA+ lid domain 397 439 IPR041569 -
Sebi78g00010 792 Pfam Cell division protein 48 (CDC48), N-terminal domain 30 111 IPR003338 -
Sebi78g00010 792 Pfam ATPase family associated with various cellular activities (AAA) 518 636 IPR003959 GO:0005524|GO:0016887
Sebi78g00010 792 Pfam ATPase family associated with various cellular activities (AAA) 245 374 IPR003959 GO:0005524|GO:0016887
Sebi78g00010 792 SMART CDC48_N_2 30 113 IPR003338 -
Sebi78g00010 792 Pfam Cell division protein 48 (CDC48), domain 2 132 193 IPR004201 -
Sebi78g00010 792 ProSitePatterns AAA-protein family signature. 345 363 IPR003960 GO:0005524|GO:0016887
Sebi78g00010 792 SMART CDC48_2_2 130 196 IPR004201 -
Sebi78g00010 792 Gene3D - 641 750 - -
Sebi78g00010 792 FunFam Cell division control 48 113 209 - -
Sebi78g00010 792 Gene3D - 210 374 IPR027417 -
Sebi78g00010 792 SUPERFAMILY ADC-like 26 110 IPR009010 -
Sebi78g00010 792 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 476 751 IPR027417 -
Sebi78g00010 792 SMART AAA_5 514 639 IPR003593 GO:0016887
Sebi78g00010 792 SMART AAA_5 241 377 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi78g00010 Sebi-Chr78 324336 329520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi78g00010 447 696 Calmodulin-binding Proteins AT3G56690 45.833 1.01e-72 255