Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi78g00005 ATGCAGAGATCTGGGTATTGCAAGGATGGAATATACAGGTCTCTCAGACCTTCTCTCGTGGTACCCAACGACCCTAATCTCTCCCTTGTCTCACACCTCTTCTCAAGAGTCTCTTCCTTTCCCACCAAACCCGCCCTTATCGATGCCGATTCATCCCAAACCTTCTCCTTCGCTCAGTTAAAGTCCCTCGTCCTTAAGCTCTCTCACGGCCTCCATCGCCTCGGGATCACCAAAAACGACGTCGTTCTATTCCTCGCACCAAACAGCATTCGTTACCCCATTTGCTTCCTCGCCGTCGTTTCCCTCGGTGCCGTTGTCTCCACCGTCAACCCATCCTACACCGTTACCGAAGTTTCCAAACAAGCCAAGGACTCCAACCCTAAACTCATCATCACCGTCGCTGAATTATGGGACAAGGTCAAGCACTTCAACCTCCCTGCAGTTTTCCTGGGTTCCACCGCCGTGCCGTCGGATTCGAAGGTCACGAGTTTCGACGCGTTGGTCGAACTCGGTGGGTCACCGACCGAGTTTCCGACGAGAAACGTGAAACAGAGTGATACGGCGGCGCTTTTGTACTCTTCCGGCACGACGGGTGTGAGCAAGGGTGTGGTTCTCACGCATGGGAATTTCATCTCTGCTTCTGTGATGATTGGAATGGACGATGAATTAGCGGGGCAAATGCACGACGTGTTCCTCTGCGTTTTGCCTATGTTTCATGTGTTTGGGCTTGCGGTTATTATCTACGCTCAGCTTCAGAGGGGAAACGCGGTGGTTTCTCTGAAGAGGTTTGAGTTTGAGGTGGTTTTGCAGACGATTGAGAAGTATAGGGTGACGCATTTGTGGGTGGTGCCTCCTATTATACTTGCTCTGGCTAAACATGCTTTGGTTGATAAGTATGATCTTTCTTCGTTGAAGCATATTGGTTCTGGTGCTGCCCCTCTTGGGAAAGAATTGATGGTGGAGTGTGCCAGACGTTTCCCTCATGCCACCGTTTGTCAGGGCTATGGTATGACTGAAACTTGTGGGATTGTTTCTGTGGAGAATTCAAGGATGGGGATTCGGCATACTGGTTCAACAGGAATGCTTGTTGCTGGAGTGGAGGCTCAAATAGTCAGTGTTGATACACTGAAGCCCCTCCCTCCTGGACAGCTGGGGGAGATATGGGTACGGGGTCCTAATATGATGCAAGGTTATCACAACAATCCACAGGCCACAAGATTAACTATCGATAAACAGGGGTGGGTACATACGGGAGATCTTGGATATATTGATGAGGATGGGCAACTTTTTGTTGTTGACCGTATTAAAGAACTGATCAAGTATAAAGGTTTTCAGGTTGCACCAGCAGAACTTGAAGGGCTTCTTGTTTCTCATCCTGAAATACTTGATGCTGTTGTCATCCCATATCCTGATGCTGAAGCTGGTGAGGTTCCAGTTGCCTATGTTGTTTGTTCACCCAATAGTTCACTAACTGAGGAAGATGTTCAAAAGTTTATTGCTAATCAGGTAGCACCTTTCAAAAGATTGCGGAGAGTGACATTCATCAACACTGTTCCTAAGACAGCATCAGGAAAAATTCTCCGAAGAGAGCTTATTGAAAAATCACGATCCAAACTATAA 1620 0.4802 MQRSGYCKDGIYRSLRPSLVVPNDPNLSLVSHLFSRVSSFPTKPALIDADSSQTFSFAQLKSLVLKLSHGLHRLGITKNDVVLFLAPNSIRYPICFLAVVSLGAVVSTVNPSYTVTEVSKQAKDSNPKLIITVAELWDKVKHFNLPAVFLGSTAVPSDSKVTSFDALVELGGSPTEFPTRNVKQSDTAALLYSSGTTGVSKGVVLTHGNFISASVMIGMDDELAGQMHDVFLCVLPMFHVFGLAVIIYAQLQRGNAVVSLKRFEFEVVLQTIEKYRVTHLWVVPPIILALAKHALVDKYDLSSLKHIGSGAAPLGKELMVECARRFPHATVCQGYGMTETCGIVSVENSRMGIRHTGSTGMLVAGVEAQIVSVDTLKPLPPGQLGEIWVRGPNMMQGYHNNPQATRLTIDKQGWVHTGDLGYIDEDGQLFVVDRIKELIKYKGFQVAPAELEGLLVSHPEILDAVVIPYPDAEAGEVPVAYVVCSPNSSLTEEDVQKFIANQVAPFKRLRRVTFINTVPKTASGKILRRELIEKSRSKL 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi78g00005 539 Gene3D - 437 538 IPR045851 -
Sebi78g00005 539 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 534 - -
Sebi78g00005 539 FunFam 4-coumarate--CoA ligase 2 437 538 - -
Sebi78g00005 539 SUPERFAMILY Acetyl-CoA synthetase-like 19 535 - -
Sebi78g00005 539 Gene3D - 9 436 IPR042099 -
Sebi78g00005 539 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 436 - -
Sebi78g00005 539 CDD 4CL 21 531 - -
Sebi78g00005 539 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Sebi78g00005 539 Pfam AMP-binding enzyme 36 441 IPR000873 -
Sebi78g00005 539 Pfam AMP-binding enzyme C-terminal domain 450 525 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi78g00005 Sebi-Chr78 164673 168883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi78g00005 1 539 Monolignol Biosynthesis Gene Families AT4G05160 68.934 0.0 794
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi78g00005 K01904 - gmx:100797843 895.96