Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi788g00011 ATGGCTCCATCCCTTCACAGCTCTTCAACGCCACCGCGCTTCACAGCGTTTTCCTCCACGGCAACAACCTCTCCGCTCCAGCGTCTAATCCTCGCACGCAACAATTTCTCCGGCGAGATTCCGGCGACTCCTTGGCCGGAGTTGAAGAACCTCGTCCAGCTCGACCTCTCCGCGAACCTTCTAGAAGGTTCGATTCCTGACCAAATCGGCGACCTGAGCTCCCTCTCCGGAACCCTAAACCTATCCTTCAACCACCTCTCCGGTAGGGTTCCAAAGTCCCTCGGGAAATTGCCTGTGACGGTGAGCTTCGATCTTCGAAACAACGATCTCAGTGGCGATTCCTCAAACGGGGTCGTTTTCGAACCAGGGACCCCAGCGTTCCTCAACAACCCGAACCTATGCGGTTTCCCTTTGCAAAATCCGTGTAACGGTTCGGCACCGAGTGAACCGGGATCGAGTCCCGGTTTGGCTCGTGAACCGGGGAGCCGGCCCAAGAAAGGGTTAAGCCCCGGTTTGATTATTTTAATCTCAGTTGCTGATGCTGCTGGTGTGGCTTTGATTGGGCTTGTGGTTGTGTATGTTTATTGGAAGAAGAAGGACAAGTCCAATGGAAGTGATGATTCTGAGATGGAGGATGGTGAGAAAGGAGGAGAGAGTGGGAGAGGGGAAGGGGAAGGGGATTTGGTGGCCATTGATAAAGGTGGTGCTTGGGAATGGGGTTCCTGTGGCTGTGAGGAGATTGGGGAGGGTGGGGAACAGAGGTACAAGGAGTTTGCTGCTGAAGTTCAAGCCATTGGGAAAGTGAAGCACCCTAATATTGTGAAGTTGAGAGCTTATTATTGGGCTCCTGATGAGAAGCTTTTGATCAGTGATTTCATCTCCAATGGCAATTTGGCCACTGCCCTTAGAGGTGTGAATGTGGCTAGCCCTTTGGGGACATCCGATCGACGAGAAAGTAAGACATTCGCCATGTGTCTGGGAAATGAGATGGCAGTGGAGAAATGGCCAACCATCACCGAATCTTTCATGGTCAACCAGGCTGAGATAGCCAAAGGAACAGCTAGGGGTTTGGCTTATCTCCATGAATGCAGTCCAAGAAAATTTGTTCATGGTGATATAAAACCCTCCAATATCCTCCTTGATGCAGAATTCCAACCCCACATTTCTGATTTTGGTCTTAACCGGCTAATTAGCATCACTGGCAACAACCCCTCTTCTGGTGGCTTTATGGGTGGAGCTCTTCCTTACTTGAAGTCATCACAAACAGAGCGAACTAACAACTATAAAGCCCCTGAGGCTCGAGTCCCTGGCTGCAGACCTACCCAGAAATGGGATGTGTACTCATTTGGAGTTATATTACTTGAATTGCTCACTGGGAAGTCCCCTGATTCTTCTCCAGCAGCATCAACTTCTATGGAAGTCCCTGACTTGGTGAGGTGGGTAAGGAAAGGGTTTGAACAAGAAAACCCATTATCTGAAATGGTTGATCCATCCCTTCTCCAAGAAGTTCATGCCAAGAAAGAGGTACTAGCTGTGTTTCATGTGGCACTATCGTGCACTGAGGGAGACCCTGAGGTCAGGCCTAGAATGAAAAGTGTCTCTGAAAATCTTGAAAGAATTTGA 1623 0.4978 MAPSLHSSSTPPRFTAFSSTATTSPLQRLILARNNFSGEIPATPWPELKNLVQLDLSANLLEGSIPDQIGDLSSLSGTLNLSFNHLSGRVPKSLGKLPVTVSFDLRNNDLSGDSSNGVVFEPGTPAFLNNPNLCGFPLQNPCNGSAPSEPGSSPGLAREPGSRPKKGLSPGLIILISVADAAGVALIGLVVVYVYWKKKDKSNGSDDSEMEDGEKGGESGRGEGEGDLVAIDKGGAWEWGSCGCEEIGEGGEQRYKEFAAEVQAIGKVKHPNIVKLRAYYWAPDEKLLISDFISNGNLATALRGVNVASPLGTSDRRESKTFAMCLGNEMAVEKWPTITESFMVNQAEIAKGTARGLAYLHECSPRKFVHGDIKPSNILLDAEFQPHISDFGLNRLISITGNNPSSGGFMGGALPYLKSSQTERTNNYKAPEARVPGCRPTQKWDVYSFGVILLELLTGKSPDSSPAASTSMEVPDLVRWVRKGFEQENPLSEMVDPSLLQEVHAKKEVLAVFHVALSCTEGDPEVRPRMKSVSENLERI 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi788g00011 540 MobiDBLite consensus disorder prediction 144 164 - -
Sebi788g00011 540 MobiDBLite consensus disorder prediction 1 20 - -
Sebi788g00011 540 Gene3D Transferase(Phosphotransferase) domain 1 339 540 - -
Sebi788g00011 540 Gene3D Ribonuclease Inhibitor 4 149 IPR032675 -
Sebi788g00011 540 SUPERFAMILY Protein kinase-like (PK-like) 247 537 IPR011009 -
Sebi788g00011 540 MobiDBLite consensus disorder prediction 201 227 - -
Sebi788g00011 540 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 17 540 IPR046959 -
Sebi788g00011 540 SMART serkin_6 210 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi788g00011 540 FunFam Leucine-rich repeat receptor-like protein kinase 50 144 - -
Sebi788g00011 540 Pfam Protein kinase domain 254 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi788g00011 540 ProSiteProfiles Protein kinase domain profile. 176 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi788g00011 540 Gene3D Phosphorylase Kinase; domain 1 230 294 - -
Sebi788g00011 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 368 380 IPR008271 GO:0004672|GO:0006468
Sebi788g00011 540 SUPERFAMILY L domain-like 23 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi788g00011 Sebi-Chr788 218297 222222 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi788g00011 26 540 Receptor kinase-like Gene Family AT1G67510 57.021 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Sebi788g00011 Pkinase 4.2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi788g00011 - - gmx:100795021 718.768