Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi788g00009 ATGACGAAGAAAGCTCTTGCCAGTTGCCACCATGAAACAAATACTGCCACGTGTCACAACCCCACCTGCTCATCAGCCTTTGCCTCAAATTCTGAAAATGTGCCACAGATAGGAAATCACGCAAGAGACGCAGTGGTGGAAGAGGTGACTCAGTGGAAGATACTCTTGAGAAGTGGAAGAAGTATAACAGGCAGCAGCAACAACAACTTGGTTCTGGAGAAAATGGGGGTTCACAAAGTTCCTGCAAAGGGCTCAAGAAAAGGGTGTATGAGAGGTAAAGGTGGGCCTCAGAATTCTGATTGCAAGTTCAGGGGTGTGAGACAGAGGATTTGGGGTAAGTGGGTTGCTGAGATTCGTGAACCTATCAATGGTAAGCATGTAGGTGAGAAAGCAAATAGGCTTTGGCTTGGTACTTTCTCTACTGCACATGAAGCTGCTCTTGCTTATGATGAAGCAGCTAAGGCCATGTATGGTCCTTGTGCCCGTTTGAACTTTCCTGAGTCTGCTGTGGACTCAATGGGCTCTAATGGATCAACATCTAGTGGATGTGATCAAAAATCACCAAATGGTTGTTCTGATGACACATTGAATGGTGGTAATCTTGTAAAAGATGAGGAGATGGAGGGGAATCTTCTCCAATCTCATGATGAAAAACTCAAATTTTCTGAGGTTGGTGTCTTTGAGGAAACTGAAGAAAAAAAGGTTCTTTCTGAAGATTGTGTGGCTGATGAGTCAGTAGAGGAGTTGAAGGAAGTGAAAATTGGTGTTGCTCAATGTCAAACAAATGAGAAGTGTAAGAATATAACTCATCAAGGGTCTTTCAGAAATGTTAAGCCTGAAACATCTGGAGAAAATGAAGGAATAGAGAGAGAATCAGAGGTGGTTTTGAAAAACTATGACATAGATGGAGAGTGTAATCATGTGCAGAAGGATATTGCCATGAATACAAGAGCTAATTGTGGCCCTTCTGATACTACTGAGCATGATATTCTAGTGGAAAGGGAAGAAACAAGAAGTGAATCTATGGAAACTTTGAAATCCTGTGAATTGAGCTGCAGCAACCTTTGCCTTGGATACCAGCAACATATGCTTCCATATAGCAATCCAATACCAAATTCTGAGCATTTTAACAACATCCAACCTGAGGCATCTATTGCAAAGAAACACAAGAAGGAAGTGATTTCAGAAATCCTGGAACTTTGTAGCAGCAGGTGCTCTAAGATTAGCCATGTTCAGTCACAAAATGAGCAATATAGAAATCAACATTTTGATGAGATGAAAACTGAGCTTAAAGGTTTGGAATGCAAGCTGAGAAATCATTCTATTGATTGCAAGAATGAAGAGGCACCAATTATAGGGGATTCCAATCATTCCATGCAGGGAACTCATCTGTTTGGTGGTGGCAATGTTGAACCAATTGAAAGAATGTCAGGGGTTGAGGCTTTGAACATCAACACTAATAGAAACTCTAAATTGAATGAGAAAGGAAACAATGGAAATGCACTTCCTGGATTTAGTTCAGGGCAGAATAGGAAGCTGTGTGATCTTTCTCAACAACTACAGAAACTGGGTGGTTGCCTGCCTGAACATTGGAATAATATGCAGTTTGCAGAACTGGAAGTAGGTTATGATTATAGTTTCTTAAATCCTGATTATGATTTTGGCTTATTGGAAGAGAAGAAGTTACTAGATGTATGTTTTTCACACATAGGATCTTAG 1719 0.4072 MTKKALASCHHETNTATCHNPTCSSAFASNSENVPQIGNHARDAVVEEVTQWKILLRSGRSITGSSNNNLVLEKMGVHKVPAKGSRKGCMRGKGGPQNSDCKFRGVRQRIWGKWVAEIREPINGKHVGEKANRLWLGTFSTAHEAALAYDEAAKAMYGPCARLNFPESAVDSMGSNGSTSSGCDQKSPNGCSDDTLNGGNLVKDEEMEGNLLQSHDEKLKFSEVGVFEETEEKKVLSEDCVADESVEELKEVKIGVAQCQTNEKCKNITHQGSFRNVKPETSGENEGIERESEVVLKNYDIDGECNHVQKDIAMNTRANCGPSDTTEHDILVEREETRSESMETLKSCELSCSNLCLGYQQHMLPYSNPIPNSEHFNNIQPEASIAKKHKKEVISEILELCSSRCSKISHVQSQNEQYRNQHFDEMKTELKGLECKLRNHSIDCKNEEAPIIGDSNHSMQGTHLFGGGNVEPIERMSGVEALNINTNRNSKLNEKGNNGNALPGFSSGQNRKLCDLSQQLQKLGGCLPEHWNNMQFAELEVGYDYSFLNPDYDFGLLEEKKLLDVCFSHIGS 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi788g00009 572 CDD AP2 101 168 IPR001471 GO:0003700|GO:0006355
Sebi788g00009 572 FunFam Ethylene-responsive transcription factor 2 101 167 - -
Sebi788g00009 572 Pfam AP2 domain 101 158 IPR001471 GO:0003700|GO:0006355
Sebi788g00009 572 SMART rav1_2 102 172 IPR001471 GO:0003700|GO:0006355
Sebi788g00009 572 MobiDBLite consensus disorder prediction 171 200 - -
Sebi788g00009 572 Gene3D AP2/ERF domain 101 168 IPR036955 GO:0003700|GO:0006355
Sebi788g00009 572 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 42 342 - -
Sebi788g00009 572 Coils Coil 423 443 - -
Sebi788g00009 572 MobiDBLite consensus disorder prediction 171 196 - -
Sebi788g00009 572 ProSiteProfiles AP2/ERF domain profile. 102 166 IPR001471 GO:0003700|GO:0006355
Sebi788g00009 572 PRINTS Ethylene responsive element binding protein signature 103 114 IPR001471 GO:0003700|GO:0006355
Sebi788g00009 572 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Sebi788g00009 572 SUPERFAMILY DNA-binding domain 102 167 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi788g00009 Sebi-Chr788 200759 203007 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi788g00009 77 167 AP2-EREBP Transcription Factor Family AT2G40340 69.231 1.38e-36 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi788g00009 AP2 1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi788g00009 - - aprc:113861479 688.337