Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi787g00024 ATGCCACCAAGTGGTTCACTTTTCCTATTTGATCGGAAGGTGCTGAGATACTTTAGAAAGGATGGCCATAACTGGAGGAAGAAAAAGATGGAAAAACGGGAACTCTCACACATTGTTCTTGTCCATTATCGGGAAGTGAAGGGAACCAAGACAAATTTTAGATTTGCTAAAGAAAATGAAGAGTCTCTTCCTTATGCTCAACAAACTTACAAAATTATGCCCAACACAGAAATGGATACTTCTTTATCTTCTAGTCTTCATCCACATAGTTACCAGGTTCCTTCACAAACTATAGATACAAGCATGAACAGTGCTCAAGCATCAGAATATGAAGAAGCTGAATCAGCATTTAATAACCATGCAAGTTCTGAATTCTACTCTTTCCTTGAGCTGCAACGCCCTGTTGTTGAAAAGATTAAAGCTCATATCACTGATTCTTACTGTCCTATGCCACTCAAAGATGATCAAGAAAAGTTGCCTGTCATTCCTGGGGTGAATTATATCCCACTCAGTCAAGCGAATAAAATCAAAGACATTCATAATGTTGGATTGACATATGAACCCTCAAAATTCCTTGGCTTTTCATCGTGGGAATCTACATTAGAAAGTAATGCTGGAAGTCATCATGTCCCTTTTCAGCCTTCATTTCCTGAAACACAATCCAACAATACAGGAATCAATAGCAGTCCCTCTCCAGGAGATGAGATAATGGCGCAACATTTTACCATCAGCATTGCTAAACAGCATGGGAATGGAAGTCTCATACAAGCTGAAGGAAGTTGGCAGGCTTCTGGATTTAATTCTTTAAGCATATCCAATTGCCCCGTAGATGCTGTGTATTCAGGCTCACAATGCGAGGTTAGTTATAACAACTGTGAGCAGGAAGTTAATGGAGTTGATTTTCAAAAATCCATGGAACAGTGCCTTCTACACCCACACAAACTAAACAAGGTTCTTATGCAAAATGGCCCTCGAGAAAAACTTCTAGAAGCAAAAGAGAAACTAAAATCAGATCTAGAGGTCAATAGAAGCCTGGATGGAGTAGAAGACAGTTATCTCACTTTAAAGAAGACTCTGTTAGATGGCTGTCCAGCAGAAGAGGGTCTTAAGAAGCTTGACAGTTTCAACCAGTGGATGAGTAAAGAACTTGGAGATGTAGAAGAATCAAATAAGCAATCCACTTCTGGTGCTTATTGGGATGAAGTTGAAAGTGAAAATGGGGTTGGCAGTACAGCTATTCCTTCCCAAGTGCACCTGGACACCTATGTACTGGATCCATCTGTTTCCAATGATCAGCTTTTTAGCATTATTGATTATTCCCCAAGCTGGACATTTGAAGGCTCAGAAGTTAAGGTTCTCATTTCAGGACGATTCTTAAGGACTCTACATGACGCAGAACACTGTAATTGGTCATGCATGTTTGGTGAGGTAGAAGTGCAAGCAGAGATCATTGGGAATGGTGTTCTTTGTTGTCATACTCCTCCACACAAGGCTGGGAGGGTTCCTTTCTATGTAACTTGTTCCAATAGGTTAGCATGTAGTGAAGTGCGAGAATTTGATTTCCGGGTTAACCATACTCGACAAGTCAACACTGCAGGTGACAACAGAGGAAGCACTTCTGATACTTTTAAAATACGATTTGGAGAACTGTTGTCCCTGGAGCATGCCTTCCCTCAGTGTTTAGATTCAATTAGTGTGAGTGAGAAATCTCAACTGATAACTGCTCTTGGCTATGATTGGGCCCTAGAACCCACAATAGTTGCTGGTGTCAACGTGAACTTTCGTGATATAAATGGATGGACTGCTCTTCATTGGGCAGCATTTGTGGCAGTTCTTGCGTCTTACTTTATCAGGGAGCGCACAGTTGCTTCCCTCATCTCTCTTGGCGCAGCACCCGGAGCACTGACTGATCCATGCCCTGAATATCCTTCTGGTAGAACACCAGCTGACCTAGCTTCTGCAAATGGACACAAAGGAATTGCGGGGTATCTTGCAGAATCTTTCCTAAGTGCACACCTCAAATCTCTTGATCTGAACAGGGACGTGGGTGAAAAATCTGGAGCAGAAGTAGTCCAAAGAGTCCAAGAACAAAACACTGCTCAAGTTAATGATGAGGACCTGTCATATGAACTGTCATTGAAAGATTCACTGGCTGCGGTGTGCAATGCCACCCAAGCTGCTGCTCTGAATGTGAAACCGCACAAGTCTAGACTAAGTGATGAACCTGTCCATGCTGCTGCAACAAGAATCCAGAACAAGTTCCGCAGTTGGAAGGGCAGAAAAGAATTTCTGATGATTCGACAACGAATAGTAAAAATTCAGGCTCATGTGAGAGGACACCAGGTTAGGAAAAACTGTGGGAAGATAATTTGGTCTGTTGGAATATTGGAGAAGGTTATATTGCGTTGGCGTCGAAAAGGTAGTGGTTTGCGTGGATTTAAATCAGAGGCAATTGCTGAGGAACTATGGAACAAGGTGAAGCAAACAGAGAAAAGGTTGGAGAAAGCCCTGGCTAGGGTGAAGTCAATGGTTCAGTATCCAGAGGCAAGAGACCAATACCATAGGCTGTTGAATGTAGTAACTGAGATCCAAGAAAATCAGGTAAAGCATGATAGGTTTTTTAACAATTCAGAAGAAACAAGAGAATTCGATAACCTCATTGATCTTGAAGCATTGTTGGATGAAGATACCTTCATGCCTACAGCCACTTAG 2712 0.4196 MPPSGSLFLFDRKVLRYFRKDGHNWRKKKMEKRELSHIVLVHYREVKGTKTNFRFAKENEESLPYAQQTYKIMPNTEMDTSLSSSLHPHSYQVPSQTIDTSMNSAQASEYEEAESAFNNHASSEFYSFLELQRPVVEKIKAHITDSYCPMPLKDDQEKLPVIPGVNYIPLSQANKIKDIHNVGLTYEPSKFLGFSSWESTLESNAGSHHVPFQPSFPETQSNNTGINSSPSPGDEIMAQHFTISIAKQHGNGSLIQAEGSWQASGFNSLSISNCPVDAVYSGSQCEVSYNNCEQEVNGVDFQKSMEQCLLHPHKLNKVLMQNGPREKLLEAKEKLKSDLEVNRSLDGVEDSYLTLKKTLLDGCPAEEGLKKLDSFNQWMSKELGDVEESNKQSTSGAYWDEVESENGVGSTAIPSQVHLDTYVLDPSVSNDQLFSIIDYSPSWTFEGSEVKVLISGRFLRTLHDAEHCNWSCMFGEVEVQAEIIGNGVLCCHTPPHKAGRVPFYVTCSNRLACSEVREFDFRVNHTRQVNTAGDNRGSTSDTFKIRFGELLSLEHAFPQCLDSISVSEKSQLITALGYDWALEPTIVAGVNVNFRDINGWTALHWAAFVAVLASYFIRERTVASLISLGAAPGALTDPCPEYPSGRTPADLASANGHKGIAGYLAESFLSAHLKSLDLNRDVGEKSGAEVVQRVQEQNTAQVNDEDLSYELSLKDSLAAVCNATQAAALNVKPHKSRLSDEPVHAAATRIQNKFRSWKGRKEFLMIRQRIVKIQAHVRGHQVRKNCGKIIWSVGILEKVILRWRRKGSGLRGFKSEAIAEELWNKVKQTEKRLEKALARVKSMVQYPEARDQYHRLLNVVTEIQENQVKHDRFFNNSEETREFDNLIDLEALLDEDTFMPTAT 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi787g00024 903 SMART CG_1_2 1 47 IPR005559 GO:0003677
Sebi787g00024 903 FunFam Calmodulin-binding transcription activator 2 429 525 - -
Sebi787g00024 903 ProSiteProfiles IQ motif profile. 744 772 IPR000048 GO:0005515
Sebi787g00024 903 Gene3D Immunoglobulins 428 525 IPR013783 -
Sebi787g00024 903 ProSiteProfiles CG-1 DNA-binding domain profile. 1 94 IPR005559 GO:0003677
Sebi787g00024 903 Pfam IQ calmodulin-binding motif 744 763 IPR000048 GO:0005515
Sebi787g00024 903 Pfam IQ calmodulin-binding motif 768 785 IPR000048 GO:0005515
Sebi787g00024 903 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 29 - -
Sebi787g00024 903 SMART iq_5 765 787 IPR000048 GO:0005515
Sebi787g00024 903 SMART iq_5 742 764 IPR000048 GO:0005515
Sebi787g00024 903 Coils Coil 819 839 - -
Sebi787g00024 903 Pfam CG-1 domain 2 32 IPR005559 GO:0003677
Sebi787g00024 903 Gene3D - 741 789 - -
Sebi787g00024 903 ProSiteProfiles IQ motif profile. 766 790 IPR000048 GO:0005515
Sebi787g00024 903 FunFam Calmodulin-binding transcription activator 2 742 790 - -
Sebi787g00024 903 SUPERFAMILY Ankyrin repeat 588 667 IPR036770 -
Sebi787g00024 903 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 735 792 IPR027417 -
Sebi787g00024 903 Gene3D - 572 670 IPR036770 -
Sebi787g00024 903 Pfam IPT/TIG domain 436 510 IPR002909 -
Sebi787g00024 903 SUPERFAMILY E set domains 436 521 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi787g00024 Sebi-Chr787 285772 293350 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi787g00024 9 899 CAMTA Transcription Factor Family AT2G22300 37.176 1.52e-169 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Sebi787g00024 TIG 1.8e-05 CL0159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi787g00024 K21596 - gmx:100798875 1283.86