Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi787g00020 ATGTTGAGCCTCTCTGTTGCCTCACCTTCTTCTTCAACCATTTGCGTTCTTCCAAAACCTTTACCATTCAAATCTTCCTTCAATGGCATTCAGCTCCGTCATCCTGGCACGTGCTCCATTCCAACGACAAAGCGCACCGCTTCAGTGTCAGTTGTGATGATGGCAAAGAGAGAAGAGGAAATGAAGGAAATTAGAGCAAAAACCACTGAACAAATCAACGAAGAGGTTATTGACCTTAAAGGCGAGCTTTTGATGCTTCGCCTTCAGAAATCGGCTCGTAACGAGTTCAAGTCCAGCGAATTCAGTCGCATGCGCAAGAGGATTGCTCGCATGCTTACTGTGAAGCGAGAAAGAGAGATCGAGGAGGGGATTGGTAAGAGGCTGTCCAGAAAACTTGATAAAAAATGGAAGAGAAGCATTGTTCCAAGACCACCTCCGTCTTTAATAAAGCTTCGGAGGAAGAAGCAGCTGAAGAAGCTGCCGAAGCTGAAAAGGCTGCTTGAGCGAGCCAACACATTTAATATGCAACAAGAACAATGGACGATGAGATGGAGAAACAAATTGTCTCAGAAGATAGAGAAGCAGGAACAGCGTTACAGAAAAAGCACTTATCAATGCTGGAGCGTCTCTCCAAACGCCACCAAACCCGTTCTTCAGACAACTCCGAATCTTCTTCCCTCGAATCCACTTCCCTCCTTCCTTTCACGCTTCTCCAATCTTAAAACCTCCATCGAGTCTCAGCTCGCCCAATCCCAAGCCATTTCTTCTTCTGATCCATCTCAGCTCAAAACGCACTTCCACAAAATCTCCGATCAATCTCCGATTTGGAAAAGCTCGTCGCCGAAAACTCCTATTTCTTGCCCTCTTACGACCCTCGACAACCTCAACTCCGAGCTAATCCCGAAGAAGAAATTCTCCTTCAAGAGCAAGGCTAGCAAGAAAGACAAGGATTCTGTTATTCCAGAACCCAAACAACCACAACCTCCGGTTCCGGATCTCGATTCCGTGAAATCGAGCTTCGCGGCGCGTGATTCGCCGGGTTTTAGAAACGAAGCGGATAGGGTTTTGGTTGGGGAGTTTAGGGATTCGGAGGTTGGGGAATTCACGATTTCGGATCTCGATTCTTGTGAAGGTTTACGTGGACCAGTGACGGGGTCGATTCATATTGAGGAAGTTGAGGGTTGCGTGTTCGTGATGGCGGTCGCATCAGATTCGATACACGGTGCCAGAGGAAGTGATTTCTACCTTAGGGTTAGGAGCAGGCCCATAATCGAGGACAGTAACGGCGTGAGGTTCGCGCCGTATTGTTTGAGTTACCAAGGGATCGAAGAAGATCTTCGCGGTGCCGGTCTCGATGCCGAGACCGAAAATTGGGCCAATGTGGATGATTTCCGGTGGCTGCGTGCGGTGCAGTCTCCGAATTGGTCAATTTTGCCGGAGAATGAGAGGGTTGAGATTGTTAATATATCCAATTCAAAAAAATGGGGAGGGAATTTGATTGTTTCTTTCTATTTTTCTGTTAAGAGCCATTTGATTCTAAAGCCTAGGTATATTGTAGCCTTTGCTCAAGTTATTCCAACTGAACCAATAGATATGATAAACGGATCTGGAAATGAAGGACACCCTGGTTCTGCTACCAACCTTGCACCATGGATACTCACTGTTGCTGCCAGCTCAACAGATAGGGATTTCACTTCTGATATCATATTAGGAAATGGTGTTAAAATCACGGGTGAAAGTCTCAGTCTTTCTGGAATGAATGCCTCCACAAGGATAATTCCTGCTTCTGAAGCCTTTGCAGGATACTTTACCTCCTTATCAATCCAGGTGAAGCAAGAGAGTTCTTTGAATAAAACCAAGACCACAGGGAAGGTTCTGGTGTGTCGCCATGTAGAGAGTTCAACAGAGTCAAAGGTGGCAAAGAGCAAGGTAGTGAAAGAGGCAGGTGGTGTTGGCATGATACTTATTGTTGAGACAGATCAAGATGTTGCCATCCCATTTGTGATCCCTTCAGCTATTGTTGGAAAGAAAACAGGAGAACGGATTCTATCCTATCTCAAGACTACACGTGAGCCTATGTCAAGGATATTCAGAGCAAAGACAGTACTAGGAGCTCGCCTTGCACCCCGACCTGATATCACAGCTCCAGGACTAAATATCCTTGCAGCATGGTCTCCAGCAGCTGGAAACATGTTCAACATTCTCTCAGGAACTTCTATGGCTTGTCCTCATGTAACTGGAATTGCAACCTTAGTCAAAGCTGTCCATCCTTCATGGTCTCCATCTGCTATCAAATCTGCCATCATGACAACTGTGCTGCTGCTGCGTGCAGCAACTGCTTGCCATGTTGTGACAAGGAGGATGTTAAATATGAGAAGAAGTGTGAGGAAAGGGGAAGATCTGTGA 2406 0.4622 MLSLSVASPSSSTICVLPKPLPFKSSFNGIQLRHPGTCSIPTTKRTASVSVVMMAKREEEMKEIRAKTTEQINEEVIDLKGELLMLRLQKSARNEFKSSEFSRMRKRIARMLTVKREREIEEGIGKRLSRKLDKKWKRSIVPRPPPSLIKLRRKKQLKKLPKLKRLLERANTFNMQQEQWTMRWRNKLSQKIEKQEQRYRKSTYQCWSVSPNATKPVLQTTPNLLPSNPLPSFLSRFSNLKTSIESQLAQSQAISSSDPSQLKTHFHKISDQSPIWKSSSPKTPISCPLTTLDNLNSELIPKKKFSFKSKASKKDKDSVIPEPKQPQPPVPDLDSVKSSFAARDSPGFRNEADRVLVGEFRDSEVGEFTISDLDSCEGLRGPVTGSIHIEEVEGCVFVMAVASDSIHGARGSDFYLRVRSRPIIEDSNGVRFAPYCLSYQGIEEDLRGAGLDAETENWANVDDFRWLRAVQSPNWSILPENERVEIVNISNSKKWGGNLIVSFYFSVKSHLILKPRYIVAFAQVIPTEPIDMINGSGNEGHPGSATNLAPWILTVAASSTDRDFTSDIILGNGVKITGESLSLSGMNASTRIIPASEAFAGYFTSLSIQVKQESSLNKTKTTGKVLVCRHVESSTESKVAKSKVVKEAGGVGMILIVETDQDVAIPFVIPSAIVGKKTGERILSYLKTTREPMSRIFRAKTVLGARLAPRPDITAPGLNILAAWSPAAGNMFNILSGTSMACPHVTGIATLVKAVHPSWSPSAIKSAIMTTVLLLRAATACHVVTRRMLNMRRSVRKGEDL 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi787g00020 801 Hamap 50S ribosomal protein L29 [rpmC]. 61 118 IPR001854 GO:0003735|GO:0005840|GO:0006412
Sebi787g00020 801 Pfam Subtilase family 706 772 IPR000209 GO:0006508|GO:0008236
Sebi787g00020 801 ProSiteProfiles C-CAP/cofactor C-like domain profile. 323 466 IPR017901 -
Sebi787g00020 801 FunFam 50S ribosomal protein L29, chloroplastic 60 125 - -
Sebi787g00020 801 Gene3D - 561 703 - -
Sebi787g00020 801 NCBIfam 50S ribosomal protein L29 63 118 IPR001854 GO:0003735|GO:0005840|GO:0006412
Sebi787g00020 801 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 533 774 IPR045051 -
Sebi787g00020 801 SUPERFAMILY Ribosomal protein L29 (L29p) 61 121 IPR036049 GO:0003735|GO:0005840|GO:0006412
Sebi787g00020 801 MobiDBLite consensus disorder prediction 307 345 - -
Sebi787g00020 801 CDD Ribosomal_L29_HIP 62 118 - -
Sebi787g00020 801 SUPERFAMILY Subtilisin-like 517 776 IPR036852 GO:0004252|GO:0006508
Sebi787g00020 801 Pfam PA domain 598 682 IPR003137 -
Sebi787g00020 801 Gene3D - 358 500 IPR016098 -
Sebi787g00020 801 Gene3D Peptidase S8/S53 domain 535 771 IPR036852 GO:0004252|GO:0006508
Sebi787g00020 801 Pfam Ribosomal L29 protein 62 118 IPR001854 GO:0003735|GO:0005840|GO:0006412
Sebi787g00020 801 Gene3D - 60 123 IPR036049 GO:0003735|GO:0005840|GO:0006412
Sebi787g00020 801 ProSitePatterns Serine proteases, subtilase family, serine active site. 737 747 IPR023828 -
Sebi787g00020 801 CDD PA_subtilisin_like 567 696 - -
Sebi787g00020 801 Pfam Tubulin binding cofactor C 365 464 IPR012945 -
Sebi787g00020 801 Coils Coil 185 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi787g00020 Sebi-Chr787 254987 264159 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi787g00020 482 775 Subtilisin-like Serine Gene Family AT4G34980 37.117 5.93e-48 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi787g00020 - - aip:107623714 374.4