Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi787g00019 ATGCAGAAGAATCCCATTGGAGATTTCCACACCGAAACACATCTCCCAAATAACACAACCATGGAGTCCCTTCGTGTTCCCCTTCACAACCTCTCCGAACTCAGCACCCGAATGGACTCTCTCCATCGCTTCATATCCGATTCCATCAACACCAACACTCTCCTCACCAAGCAACACATGGACACTGTCTCCAACGAGATCGTATCCGCCATTCGCCACGTCATCATCAACGCCGCCGCCATCGTCTCCGCCGAAGCACCCCCGGAAACGGTTCCTCCTAAACAACCAACGTTTGACTCAAAAGTCGAGATTGTCGGCGACAACAAGGAACACTGTGAAATCGTGGAGTTCGACGCGATGGAGTTGTTGGCGAAGCACTTACACTTTTGCAAGGTTTGCGGGAAAGGCTTCACGCGCGACGCGAACTTGCGTATGCACATGCGCGCGCACGGGGAACAGTACAAGGCCCCAGAAGCGTTAGCGTCAAAGAAGCCGCGTGGGGAAACGCGCTTAACGGCGACGTTGTTTTCTTGCCCTTTCGAGGGTTGCAAGAGGAACAAGCTACATAGGAAGTTCAGGCCACTGATGTCGGTGTTTTGTTTAAAGAACCATTTCAAGAGAAGCCATTGCCCGAAAACGTACACGTGCGATCGGTGCCGGAAGAAGAGTTTTGCGGTGCTTTCGGACTTGAAGAGTCACGCGAAGCAGTGCAGGGGAGAGTCCACGTGGAAGTGCTCGTGTGGAACCACGTTTTCAAGGAAGGAGAAGCTGTTTGGTCACGTGGCGCTGTTTGAGGGGCACGTGCCGGCGCTTGAGGTTGGTGAAGAGGATAGAGGGGAACCGATGGCGGCGGCTGAAGGGGAAGGTGCGGAGGGACCACCGTTGAGGAAGGAAAGTGATGAGTTGCCTGAAGGATTCTTTGATGGTTTGGATGAGTTTGGGTTTGGCTCACCTTTATTGGTTTGA 966 0.5321 MQKNPIGDFHTETHLPNNTTMESLRVPLHNLSELSTRMDSLHRFISDSINTNTLLTKQHMDTVSNEIVSAIRHVIINAAAIVSAEAPPETVPPKQPTFDSKVEIVGDNKEHCEIVEFDAMELLAKHLHFCKVCGKGFTRDANLRMHMRAHGEQYKAPEALASKKPRGETRLTATLFSCPFEGCKRNKLHRKFRPLMSVFCLKNHFKRSHCPKTYTCDRCRKKSFAVLSDLKSHAKQCRGESTWKCSCGTTFSRKEKLFGHVALFEGHVPALEVGEEDRGEPMAAAEGEGAEGPPLRKESDELPEGFFDGLDEFGFGSPLLV 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi787g00019 321 SMART c2h2final6 176 209 IPR013087 -
Sebi787g00019 321 SMART c2h2final6 214 235 IPR013087 -
Sebi787g00019 321 SMART c2h2final6 128 150 IPR013087 -
Sebi787g00019 321 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 105 277 IPR044300 GO:0010044|GO:0010447
Sebi787g00019 321 MobiDBLite consensus disorder prediction 275 303 - -
Sebi787g00019 321 Gene3D Classic Zinc Finger 128 158 - -
Sebi787g00019 321 SUPERFAMILY beta-beta-alpha zinc fingers 125 152 IPR036236 -
Sebi787g00019 321 FunFam Zinc finger 45-like 127 151 - -
Sebi787g00019 321 ProSiteProfiles Zinc finger C2H2 type domain profile. 128 155 IPR013087 -
Sebi787g00019 321 SUPERFAMILY beta-beta-alpha zinc fingers 212 261 IPR036236 -
Sebi787g00019 321 Gene3D Classic Zinc Finger 170 265 - -
Sebi787g00019 321 ProSitePatterns Zinc finger C2H2 type domain signature. 130 150 IPR013087 -
Sebi787g00019 321 Pfam Zinc-finger of C2H2 type 129 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi787g00019 Sebi-Chr787 242053 243018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi787g00019 113 292 C2H2 Transcription Factor Family AT1G34370 53.514 2.61e-67 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi787g00019 zf-met 0.0021 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi787g00019 - - gmx:100798348 381.719