Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi787g00018 ATGGAGTTCATATTTGTGCTATTGCTATGGAGTTGCTTGTTTTCTTTTGTGTTGCCTGATGATCAAGGAGATGCACTATTTGCACTGAAGATATCATTGAATGCTTCAGGTCACCAGCTTACTGACTGGAATCAAAATCAAGTTAACCCTTGTACATGGTCACGTGTTTATTGTGACCAGAACTACAATGTTGTTCAAGTTTCACTAGCGTTGATGGGATTCACAGGATACTTGACCCCAAGAATAGGAGCTCTAAAATATCTTACAACTCTTTCATTGCAAGGGAATGGCATCACTGGTGACATACCAAAAGAATTAGGAAACTTGACGAACTTAGTCAGGTTGGATTTGGAAAACAACAGATTAAGTGGTGAAATACCACCTTCCCTTGGTAATCTTAAAAAGCTCCAATTCTTGACATTGAGTGTAAACAATCTCACTGGGACAATTCCTGAATCACTTGGAAGTCTCCCAAGCTTGATCAATATTTTGCTAGATTCAAATAATCTTAGCGGCCAAATTCCAGAGCAGTTATTTGAAGTTCCTAAATACAATTTCACTGGAAATAAGTTGATTTGTGGTGTGAATTATCGTCAACCTTGTGCATCTAATAATGCAGATGAAGGCGAAGTTGATCGGCGAATTGCATTTGGTCAACTAAAAAGATTTGCATGGAGAGAACTACAGATAGCTACAGACAACTTCAGTGAGAAAAATGTTTTAGGACAAGGAGGCTTTGGAAAGGTTTATAAAGGTGTTCTTGCTGATAACACAAAAGTTGCTGTCAAAAGGTTAACTGATTATGAAAGTCCTGGGGAGATGCAGCTTTCCAGCAACTTAAGTGTTGCCTATCGGCTACGAGAACTGGTTTTCAAAACCAGTCCAGTTCTCCTGCTTTTCCAGGTTTTCACTAGTTCTGGGCAGTTGAAATACCAAGAACTCAAACCTGGGGAACCTGTTTTGGACTGGCCTACAAGAAAACGAGTGGCTTTGGGAACAGCCCGTGGCCTAGAATATCTTCATGAGCATTGCAATCCCAAGATTATTCATCGGGATGTGAAGGCAGCTAATGTATTACTAGATGAAGATTTTGAGGCAGTTGTTGGCGACTTTGGTTTGGCAAAGTTAGTGGATGTTCGAAAGACTAATGTGACAACTCAAGTTCGCGGGACCATGGGCCACATAGCTCCTGAATATTTGTCAACTGGAAAGTCTTCAGAGAGGACTGATGTTTTTGGTTATGGGATTATGCTTTTGGAGCTTGTTACAGGTCAACGAGCAATTGACTTTTCACGTTTGGAAGAGGAAGATGATGTGCTATTGCTTGACCATGTTAAGAAATTAGAACGGGAGAAAAGACTAGATGCTATTGTTGACCGCAACCTAAATAAAAATTACAACATACAAGAGGTGGAAATGATGATACAAGTTGCATTACTCTGCACACAAGCAACCCCAGAGGACCGTCCACCAATGTCTGAAGTTGTAAGAATGCTAGAAGGAGAAGGGTTAGCTGAAAGGTGGGAGGAATGGCAGCATGTGGAGGTCAATCGGAGGCAAGAATACGAGAGATTACACAGAAGATTTGACTGGGGAGAAGATTCGGTTTATAATCAAGATGCCATTGAGTTGTCTGGTGGAAGATAA 1647 0.408 MEFIFVLLLWSCLFSFVLPDDQGDALFALKISLNASGHQLTDWNQNQVNPCTWSRVYCDQNYNVVQVSLALMGFTGYLTPRIGALKYLTTLSLQGNGITGDIPKELGNLTNLVRLDLENNRLSGEIPPSLGNLKKLQFLTLSVNNLTGTIPESLGSLPSLINILLDSNNLSGQIPEQLFEVPKYNFTGNKLICGVNYRQPCASNNADEGEVDRRIAFGQLKRFAWRELQIATDNFSEKNVLGQGGFGKVYKGVLADNTKVAVKRLTDYESPGEMQLSSNLSVAYRLRELVFKTSPVLLLFQVFTSSGQLKYQELKPGEPVLDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLDAIVDRNLNKNYNIQEVEMMIQVALLCTQATPEDRPPMSEVVRMLEGEGLAERWEEWQHVEVNRRQEYERLHRRFDWGEDSVYNQDAIELSGGR 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi787g00018 548 SUPERFAMILY L domain-like 22 185 - -
Sebi787g00018 548 Gene3D Ribonuclease Inhibitor 19 202 IPR032675 -
Sebi787g00018 548 FunFam Somatic embryogenesis receptor kinase 1 205 290 - -
Sebi787g00018 548 Gene3D Transferase(Phosphotransferase) domain 1 308 519 - -
Sebi787g00018 548 FunFam Somatic embryogenesis receptor-like kinase 1 304 519 - -
Sebi787g00018 548 ProSitePatterns Serine/Threonine protein kinases active-site signature. 348 360 IPR008271 GO:0004672|GO:0006468
Sebi787g00018 548 Pfam Protein kinase domain 236 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi787g00018 548 ProSitePatterns Protein kinases ATP-binding region signature. 241 263 IPR017441 GO:0005524
Sebi787g00018 548 Gene3D Phosphorylase Kinase; domain 1 205 290 - -
Sebi787g00018 548 SUPERFAMILY Protein kinase-like (PK-like) 217 500 IPR011009 -
Sebi787g00018 548 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 4 510 - -
Sebi787g00018 548 Pfam Leucine rich repeat N-terminal domain 19 59 IPR013210 -
Sebi787g00018 548 Pfam Leucine rich repeat 87 146 IPR001611 GO:0005515
Sebi787g00018 548 SMART serkin_6 235 499 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi787g00018 548 FunFam Putative LRR receptor-like serine/threonine-protein kinase 19 203 - -
Sebi787g00018 548 ProSiteProfiles Protein kinase domain profile. 235 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi787g00018 Sebi-Chr787 220756 228330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi787g00018 1 548 Receptor kinase-like Gene Family AT5G10290 67.769 0.0 771
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Sebi787g00018 Pkinase 1.6e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi787g00018 - - gmx:100793416 900.197