Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi787g00013 ATGGATGAGGAAGAGCACGAGGTGTACGGAGGAGAGATCCCAGACGTGGAAGGAGACGTCGACATGTCCGCCGCAGACGATGACGCCGCCGTCAAGGAGCTCGACGAGATGAAGCGCCGCTTGAAGGAGATGGAAGAGGAAGCCGCCGCTCTCCGTGAGATGCAAGCAAAGGTCGAGAAGGAGATTGGCACCGTTCAAGATCCTGCCAGTGCAGCAGCTTCTCAGGCAAACAAGGAGGAGGCAGATTCTCGTTCTGTTTTTGTTGGCAATGTTGATTATGCTTGCACTCCAGAAGAAGTGCAGCAACACTTTCAATCTTGTGGAACAGTAAACAGGGTCACTATCCTGACAGACAAGTTTGGTCAGCCTAAAGGCTTTGCTTATGTGGAATTTGTTGAGACTGAAGCTGTTCAAGAGGCTCTACTGTTGAATGAATCTGAATTGCATGGCCGTCAATTGAAGGTTCTGCCCAAGAGGACCAATGTTCCTGGAATGAAACAGTATCGTCCTAGGCGCTTTAGTCCTTACATGGCATATGGCTTCAGGAGACCATATCCTTCTCCTTACTTTTACTCCCCTTATGGGAAGGCTCCTAGGTTTAGAAGGCCATCTCGTTTCATGCCCTACTACTAG 633 0.4976 MDEEEHEVYGGEIPDVEGDVDMSAADDDAAVKELDEMKRRLKEMEEEAAALREMQAKVEKEIGTVQDPASAAASQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVETEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRFSPYMAYGFRRPYPSPYFYSPYGKAPRFRRPSRFMPYY 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi787g00013 210 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 160 IPR000504 GO:0003723
Sebi787g00013 210 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 23 167 - -
Sebi787g00013 210 FunFam Polyadenylate-binding protein 1 22 156 - -
Sebi787g00013 210 Gene3D - 22 156 IPR012677 -
Sebi787g00013 210 SUPERFAMILY RNA-binding domain, RBD 74 181 IPR035979 GO:0003676
Sebi787g00013 210 CDD RRM_II_PABPs 85 156 - -
Sebi787g00013 210 MobiDBLite consensus disorder prediction 1 23 - -
Sebi787g00013 210 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 154 IPR000504 GO:0003723
Sebi787g00013 210 MobiDBLite consensus disorder prediction 60 81 - -
Sebi787g00013 210 Coils Coil 27 61 - -
Sebi787g00013 210 SMART rrm1_1 85 156 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi787g00013 Sebi-Chr787 132944 139232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi787g00013 81 155 Eukaryotic Initiation Factors Gene Family AT2G36660 34.211 2.34e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi787g00013 K14396 - gmx:100789721 354.755