Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi787g00008 ATGGAAGAACGGTATGAGATAATCAAAGATATTGGATCAGGGAACTTTGGTGTCGCAAAGCTGGTAAGGGAGAAATGGAGTGGTCAGTTATACGCTGTCAAGTTTATTGAGAGAGGCTTCAAGATTGATGAGCACGTGCAAAGGGAAATCATAAATCATAGATCCTTGAAGCATCCTAATATCGTTAGATTTAAAGAGGTGTTACTTACTCCAACTCATCTAGCTATAGTCATGGAATATGCAGCAGGAGGAGAATTATTTGAAAGAATATGCAGTGCTGGTAGATTTAGTGAGGACGAGGCAAGATATTTCTTCCAGCAGCTGATTTCTGGAGTCAGCTATTGCCATTCAATGGAAATTTGCCATAGAGATCTTAAGCTGGAAAACACACTTTTAGATGGAAGCTCAGCACCACGGCTCAAAATCTGTGACTTTGGTTACTCAAAGTCATCTGTTCTGCACTCCCAGCCAAAATCAACAGTAGGAACCCCTGCCTATATTGCACCAGAGGTCTTGTCAAGAAGGGAATATGATGGGAAGGTTGCAGATGTATGGTCTTGTGGGGTGACTTTATATGTGATGCTAGTTGGCGCTTATCCTTTTGAAGACCCAGAAGACCCAAGAAACTTCAGAAAAACACTTCAGCGAATTCTTAGTGTCCACTATTCTATTCCAGACTATGTACGTATCAGTAAAGAGTGCAGGCATCTTTTATCTCGAATATTTGTAGCCAACCCAGAGAAGAGAATCACTATACCAGAAATTAAAATGCATCCGTGGTTCCTAAAGAACTTGCCACTAGAATTTATGGACGAGGGTGATGGTGGGTTACAAAATGATGTGAATGATTCATCTTCTCAGAGCATTGAAGAAATATTGTCCATAATTCAAGAGGCTAGGAAGCCAGGGGAGGGCCCAAAAGTTGGTGGGCAGTTTGTTGGGGGAAGCATGGATCTTGATGATATGGATGCAGATGCTGACATCGATGAGATTGATACAAGCGGTGATTTTGTCTGTGCATTGTGA 1026 0.4172 MEERYEIIKDIGSGNFGVAKLVREKWSGQLYAVKFIERGFKIDEHVQREIINHRSLKHPNIVRFKEVLLTPTHLAIVMEYAAGGELFERICSAGRFSEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGSSAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLSRREYDGKVADVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTLQRILSVHYSIPDYVRISKECRHLLSRIFVANPEKRITIPEIKMHPWFLKNLPLEFMDEGDGGLQNDVNDSSSQSIEEILSIIQEARKPGEGPKVGGQFVGGSMDLDDMDADADIDEIDTSGDFVCAL 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi787g00008 341 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Sebi787g00008 341 SMART serkin_6 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi787g00008 341 FunFam Serine/threonine-protein kinase SRK2E 1 80 - -
Sebi787g00008 341 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Sebi787g00008 341 FunFam Serine/threonine-protein kinase SRK2E 81 269 - -
Sebi787g00008 341 Pfam Protein kinase domain 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi787g00008 341 SUPERFAMILY Protein kinase-like (PK-like) 3 266 IPR011009 -
Sebi787g00008 341 Gene3D Transferase(Phosphotransferase) domain 1 81 267 - -
Sebi787g00008 341 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Sebi787g00008 341 ProSiteProfiles Protein kinase domain profile. 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi787g00008 341 CDD STKc_SnRK2 4 260 - -
Sebi787g00008 341 PANTHER SERINE/THREONINE KINASE 3 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi787g00008 Sebi-Chr787 103918 106492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi787g00008 4 271 CBL-interacting serine-threonine protein kinases AT4G24400 43.682 2.19e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Sebi787g00008 Pkinase 1.4e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi787g00008 K14498 - gmx:100807981 633.639