Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi787g00002 ATGGGTGAAGAGGGAGAAGAAGTGGTGTTGAGAAAGAAGGAACACATGGGAGTTAATGGAGATAATTGGTTGTATGAGGAACAAAGTCCAAGGAACAACCACGTGTATGGTAGGGATTTTCAGTCCATGTTGGAAGGACTTGATGAGGAAGGGTGTGTTGAAGAATCAGGGCATCAATCTGAGAAGAAAAGGAGACTAAGTGTTGATCAGGTCAAGGCTTTGGAGAAGAACTTTGAGGTAGAAAACAAGCTTGAACCAGAAAGGAAGGTGAAACTTGCTCAAGAGCTTGGCTTGCAACCAAGACAAGTAGCTGTTTGGTTCCAAAACCGTCGAGCTAGATGGAAAACCAAGCAATTGGAAAGAGACTATGGTGTTCTGGAAGCCAATTATGACACACTTAAACTTAACTATGACACCCTCCAACGAGACAATGAATCCTTACTCAAAGAGATTAAGGAATTGAAATCAAGGCTTGAAGAGGAAAACACTGAAAGTGGTGCTTCAGTGAAAGAAGAGATGATGACAACCCTGCAAGACTCAGAATACAAAATGAACACAGTTTCTGAAACCCCAATTCCTGGATCCGATTCTAAGGATTTGAGTTATGAATGCTTCAACAATAGTTGTGATGGGATGAGGCCTGCAATTTCTTCTCAGATGAACAAGCACCGACCCTGCAGTGGGAATAAGAGAGATTTTGCACGGTGTATAGTATTGGAGAGAGATGGAGATGGTTGTAAAAATGAATTGGAATATGGCGTTGGGTTTGAAGGTTCGCATGGTGATGAAAGAGGAGAACTGAGAGAGAAGGGCACGCATGGCGTGGGGTCGGAGATGACGATTGAAGGTGAATGA 855 0.4304 MGEEGEEVVLRKKEHMGVNGDNWLYEEQSPRNNHVYGRDFQSMLEGLDEEGCVEESGHQSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLEANYDTLKLNYDTLQRDNESLLKEIKELKSRLEEENTESGASVKEEMMTTLQDSEYKMNTVSETPIPGSDSKDLSYECFNNSCDGMRPAISSQMNKHRPCSGNKRDFARCIVLERDGDGCKNELEYGVGFEGSHGDERGELREKGTHGVGSEMTIEGE 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi787g00002 284 SUPERFAMILY Homeodomain-like 44 119 IPR009057 -
Sebi787g00002 284 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981|GO:0006355
Sebi787g00002 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 53 190 IPR045224 GO:0003700
Sebi787g00002 284 MobiDBLite consensus disorder prediction 257 275 - -
Sebi787g00002 284 PRINTS Lambda-repressor HTH signature 88 97 IPR000047 GO:0003677
Sebi787g00002 284 PRINTS Lambda-repressor HTH signature 97 113 IPR000047 GO:0003677
Sebi787g00002 284 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677
Sebi787g00002 284 Pfam Homeodomain 62 115 IPR001356 GO:0003677
Sebi787g00002 284 FunFam Homeobox-leucine zipper protein HAT5 55 119 - -
Sebi787g00002 284 CDD homeodomain 62 118 IPR001356 GO:0003677
Sebi787g00002 284 SMART HOX_1 60 121 IPR001356 GO:0003677
Sebi787g00002 284 Coils Coil 116 164 - -
Sebi787g00002 284 MobiDBLite consensus disorder prediction 257 284 - -
Sebi787g00002 284 Pfam Homeobox associated leucine zipper 117 158 IPR003106 GO:0006355|GO:0043565
Sebi787g00002 284 Gene3D - 56 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi787g00002 Sebi-Chr787 10280 12099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi787g00002 26 192 Homeobox Transcription Factor Family AT4G40060 59.218 4.74e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi787g00002 Homeodomain 2.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi787g00002 K09338 - gmx:100796213 300.827