Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi783g00009 ATGTTAGGGGAAGAGGGGAAGGAGAAGGAGAAGGAGAAGAAACCCTCCGTTGAGGGTGTTACTAGGAGAATCTATTCTCGTTCTGTTTCATGGACTGATCGGTCTCCGAATACCCGAAAGCCACCGCCACCGCCACCACCGGGAAATAGCAAACCACCACGATCATTGTTGCCACCTCTTCAGCCTCTCTCAATCAGCAAGCGTAGCGTAGAGGAATGGCCTAGCGCAGGATCTGATGATCTTGGAGTTTGGCCCCTTCCACAAACTCCAAGAGGGTCCATCAGAGCCTATGAACCCAACAAGGATTTTCAGTTCAAGAGGGACAAATTGGCCTTCTTTGATAAGGAGTGTTCAAGAATTGCTGAGCATATATACTTGGGGAGTGATACAGTAGCCAAGAATCACCAACTCCTCAGGCGAAATGGAATAACACATGTGCTCAACTGTGTTGGGTTTGTTTGTCCAGAGTATTTCAAGAGTGATTTTGTGTATAAGACACTTTGGTTGCAGGATAGCCCCACAGAGGACATCACTAGTATTCTCTATGATGTGTTTGATTACTTTGAGGATGTTAGAGAGCAAGGTGGGCGTGTCCTTGTTCATTGTTGTCAAGGGGTTTCGAGATCAACAACTCTGGTAATTGCTTACCTCATGTGGAGGGAGGGACAGAGCTTTGAAGATGCTTTTCAGTTTGTGAAGACTGCAAGGGCAGTGACTAACCCCAACATGGGTTTTGCTTGTCAACTTTTGCAGTGTCAGAAACGAGTACATGCTATGCCTGCAAGTCCAAATTCTATTCTTAGGATGTACAGGATGGCTCCTCACTCTCCCTATGACCCTCTTCATTTGGTCCCTAAAATGGTAAACCAGCCAGGTGTACAAGCACTTGATTCTCGTGGGGCATTCATTATCCATATTCCTTCTGCTATTTATGTTTGGATTGGAAAACATTGTAACTCTGTGATGTCATGCAATGCAAGGAGTGCAGCTTTTCAGGTCATCCGTTATGAGAGGGCAAAGGGACCAATTCTGAGCATCCATGAAGATGAAGAACCACCCGGATTTTGGGGTGCTCTTGCTGATAATTCTGACAAAGCAGGGGTCAAGGAGGAACCACCAGTGTTGAATTCTGAAAGCATGGAGATTGCTGATGCGGTTAATATGGGGATTGGTCCAAGAAAAGTTGATGCATATGATTTGGATTTTGAGATTTTCCACAAGGCACTTGCTGGTGGGGTTGTTCCACCTTTCTCTGTATCTAATGCTGAATCAGAAACTTGCCTTCCTGCTAGAGAACATGGTTGGGCAAGACTGAGGAGGAAGTTTGCTAGTGGTGTCATGAAAGAATTGTTAGCATCCCCCAAATGGAACTGTGATGCAACCTCATCCAATGATAAATGCAGTGTAATTGTGGAAGAAAAAAACCAAGATTCTGTTGCTGATCCTTTGTCACCATCATCAAATCATCCCTGTGGTTCACCAGATTCCTTTGAATGTTCTCCAAATGACAGCTTAGGCAGGGCAAAAGATACTGTTGAAGCCATGGACTTCTCTGTTCCTGGTGTTGCTTCAATACTGCCACTGTCTCCTCCTGGCACATCAAATCCTTTTCCTTGTTTTCTAAGCAGCAGCCCAAAATTCAATCCCAAGTCGCCAACACTTTCACCTTCAAGTTCTGATTATGCAAGTTCATTTACATTTTCACCTTCCTCTACCAATTGGTCAGACTTGTCATTTGTGTCTTCTAGGCAGCCATCACCATCTGGCCTGGAATCAACTGAACCCTTTTATGATAAAGATGTATCTTTCTCAGGAAGTTCCTCTTTACTTCACAAAGAAGATGTCTCTTCACCTTCAGAGTCATTTTTGGCTAATCACACCTTGGGAGGAGCAAATTCCAATTTGCCACTGAAAGGGTCTTTTCTCTCCATTGCAGAGCGCAGAGGGAATCCACCACCTCGGATGTTGCTATCCTCTATTAACGAATCCTCTCACGTCCACAAGAACCTGGTAAGATCACAATCATTCTCTTTGCCTGACTTAGATGATAATATGATGAAGGATGATGGTTGCAAACAATCTGATCATGAAAACTATGGAAAATGGCTAGTATCAGATGATGGTATCATTAGTTCAGGTGTTGAATCGCAGGGTGAGATTAATGACATAGAGGAACACGGTACCATGTTATGTAATATGATGGCTGAGCTTGAAGTAGAGGAGAAAGTTAATTAA 2235 0.4398 MLGEEGKEKEKEKKPSVEGVTRRIYSRSVSWTDRSPNTRKPPPPPPPGNSKPPRSLLPPLQPLSISKRSVEEWPSAGSDDLGVWPLPQTPRGSIRAYEPNKDFQFKRDKLAFFDKECSRIAEHIYLGSDTVAKNHQLLRRNGITHVLNCVGFVCPEYFKSDFVYKTLWLQDSPTEDITSILYDVFDYFEDVREQGGRVLVHCCQGVSRSTTLVIAYLMWREGQSFEDAFQFVKTARAVTNPNMGFACQLLQCQKRVHAMPASPNSILRMYRMAPHSPYDPLHLVPKMVNQPGVQALDSRGAFIIHIPSAIYVWIGKHCNSVMSCNARSAAFQVIRYERAKGPILSIHEDEEPPGFWGALADNSDKAGVKEEPPVLNSESMEIADAVNMGIGPRKVDAYDLDFEIFHKALAGGVVPPFSVSNAESETCLPAREHGWARLRRKFASGVMKELLASPKWNCDATSSNDKCSVIVEEKNQDSVADPLSPSSNHPCGSPDSFECSPNDSLGRAKDTVEAMDFSVPGVASILPLSPPGTSNPFPCFLSSSPKFNPKSPTLSPSSSDYASSFTFSPSSTNWSDLSFVSSRQPSPSGLESTEPFYDKDVSFSGSSSLLHKEDVSSPSESFLANHTLGGANSNLPLKGSFLSIAERRGNPPPRMLLSSINESSHVHKNLVRSQSFSLPDLDDNMMKDDGCKQSDHENYGKWLVSDDGIISSGVESQGEINDIEEHGTMLCNMMAELEVEEKVN 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi783g00009 744 MobiDBLite consensus disorder prediction 479 500 - -
Sebi783g00009 744 MobiDBLite consensus disorder prediction 1 20 - -
Sebi783g00009 744 ProSiteProfiles Dual specificity protein phosphatase domain profile. 116 258 IPR020422 GO:0006470|GO:0008138
Sebi783g00009 744 CDD DSP 117 251 - -
Sebi783g00009 744 MobiDBLite consensus disorder prediction 1 61 - -
Sebi783g00009 744 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 106 258 IPR029021 -
Sebi783g00009 744 Pfam Dual specificity phosphatase, catalytic domain 124 254 IPR000340 GO:0008138|GO:0016311
Sebi783g00009 744 PANTHER MKPA PROTEIN 15 669 - -
Sebi783g00009 744 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 175 236 IPR000387 GO:0016311|GO:0016791
Sebi783g00009 744 SMART dsp_5 116 255 IPR020422 GO:0006470|GO:0008138
Sebi783g00009 744 SUPERFAMILY Actin depolymerizing proteins 262 361 - -
Sebi783g00009 744 Gene3D Protein tyrosine phosphatase superfamily 98 258 IPR029021 -
Sebi783g00009 744 MobiDBLite consensus disorder prediction 477 505 - -
Sebi783g00009 744 ProSitePatterns Tyrosine specific protein phosphatases active site. 200 210 IPR016130 GO:0016311|GO:0016791
Sebi783g00009 744 MobiDBLite consensus disorder prediction 37 59 - -
Sebi783g00009 744 Gene3D Severin 268 366 IPR029006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi783g00009 Sebi-Chr783 218002 220236 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi783g00009 36 152 Protein tyrosine phosphatase (PTP) family AT3G55270 50.376 1.99e-31 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi783g00009 - - lja:Lj6g3v0574850.1 1116.29