Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi782g00016 ATGCCAGAAAACCGCCAGGTTCCAAGGAATGCTTCTTCTAATCCATCTAGTGACAACATTGAAGAAGCAATTCGGCGTTTGAAAATCAATGATAATAGGGACAGAGATGCTGCAGCTCAATCTATTCCATATCCAGATCGACCTGGTGAACCTGATTGCTTATATTATTTGAGGACTGGAATGTGTGGTTATGGAAGTAACTGTCGATATAATCACCCTGCTCATGTTTCACTTGTTCCTCAATATGGTGAAGAACTCCCTGAGAGAGTTGGGCAACCTGATTGTGAGTATTTTCTTAAGACAGGGACATGCAAGTATGGATCAACATGTAAATATCATCATCCAAAGGACAGGCGAGGTGCTGATCCTGTATTATTCAATACTCTAGGTCTTCCCATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACTGGATCTTGTAAGTTTGGAGTTGCATGCAAGTTTCATCATCCACAGCATGCTTCCTTTGGAGCTTACCCAATGGCTGGATCTCCTGCCTCAACAATGATTCCTACATCAGGTTTACCATATGTTGGTAACTTTCCTGCATGGACAGTATCAAGAATGTCATATTTATCTGGGCAGGGCCTTCAATCTTATGTTCCTCCTCTTCTGTCATCTTCACAAGGCATTATACCTGCGCAGAACTGGAACAACTACATGGGAAATATGAACCCTGCAATGCCTACTGGTTTTCTTGGATCTAATCTTGTCTACGACTACATGAATCCAAACGAGTCATTTTCTGGTGGGCAGGCAATAAGCTCAACCCTCCCAGATAGACCTGATCAACCAGAATGTAGATACTTTATGAGCACTGGGACCTGCAAATATGGATCTGATTGCAAGTTCCACCATCCAAAAGAAAGAATAGCCCAATCACCAATAAATCCACTTGGCCTTCCTTTGAGACCTGGGCAAGCCATATGCTCTTATTACAGAATCTATGGAATATGCAAATTTGGCCCAACATGCAAATTTGATCATCCAGTTTTGACTATCCCTCAGAACTATGGCTTGACCTCGCCTGCTCTATCTGTACTTAACTCATCTATCATTAGTAATCCAAGGGAGTTGTCAACTGTTAAACCACCTGAGACATCTCCATCTAAATTATCAAGTGATAAGCTTAAGCACTTTGATACAAAAGCTACTACAGAGGATTCACCCAAACAAGCTGATACTACTTCAAATTCTGAGTCTTTACATGAATAA 1242 0.4138 MPENRQVPRNASSNPSSDNIEEAIRRLKINDNRDRDAAAQSIPYPDRPGEPDCLYYLRTGMCGYGSNCRYNHPAHVSLVPQYGEELPERVGQPDCEYFLKTGTCKYGSTCKYHHPKDRRGADPVLFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQHASFGAYPMAGSPASTMIPTSGLPYVGNFPAWTVSRMSYLSGQGLQSYVPPLLSSSQGIIPAQNWNNYMGNMNPAMPTGFLGSNLVYDYMNPNESFSGGQAISSTLPDRPDQPECRYFMSTGTCKYGSDCKFHHPKERIAQSPINPLGLPLRPGQAICSYYRIYGICKFGPTCKFDHPVLTIPQNYGLTSPALSVLNSSIISNPRELSTVKPPETSPSKLSSDKLKHFDTKATTEDSPKQADTTSNSESLHE 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi782g00016 413 Gene3D - 46 121 - -
Sebi782g00016 413 Gene3D - 268 347 - -
Sebi782g00016 413 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Sebi782g00016 413 MobiDBLite consensus disorder prediction 367 413 - -
Sebi782g00016 413 MobiDBLite consensus disorder prediction 1 20 - -
Sebi782g00016 413 ProSiteProfiles Zinc finger C3H1-type profile. 270 298 IPR000571 GO:0046872
Sebi782g00016 413 MobiDBLite consensus disorder prediction 1 22 - -
Sebi782g00016 413 SUPERFAMILY CCCH zinc finger 52 74 IPR036855 GO:0046872
Sebi782g00016 413 MobiDBLite consensus disorder prediction 398 413 - -
Sebi782g00016 413 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872
Sebi782g00016 413 SUPERFAMILY CCCH zinc finger 274 299 IPR036855 GO:0046872
Sebi782g00016 413 ProSiteProfiles Zinc finger C3H1-type profile. 313 341 IPR000571 GO:0046872
Sebi782g00016 413 SUPERFAMILY CCCH zinc finger 312 339 IPR036855 GO:0046872
Sebi782g00016 413 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Sebi782g00016 413 SMART c3hfinal6 270 297 IPR000571 GO:0046872
Sebi782g00016 413 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Sebi782g00016 413 SMART c3hfinal6 313 340 IPR000571 GO:0046872
Sebi782g00016 413 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Sebi782g00016 413 PANTHER PROTEIN PHOSPHATASE RELATED 21 365 - -
Sebi782g00016 413 SUPERFAMILY CCCH zinc finger 133 162 IPR036855 GO:0046872
Sebi782g00016 413 MobiDBLite consensus disorder prediction 381 397 - -
Sebi782g00016 413 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 92 116 IPR000571 GO:0046872
Sebi782g00016 413 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 315 339 IPR000571 GO:0046872
Sebi782g00016 413 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 272 297 IPR000571 GO:0046872
Sebi782g00016 413 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Sebi782g00016 413 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 161 IPR000571 GO:0046872
Sebi782g00016 413 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Sebi782g00016 413 SUPERFAMILY CCCH zinc finger 93 117 IPR036855 GO:0046872
Sebi782g00016 413 Gene3D - 122 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi782g00016 Sebi-Chr782 428634 432114 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi782g00016 1 409 C3H Transcription Factor Family AT1G04990 48.558 8.68e-122 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi782g00016 zf-CCCH 1.1e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi782g00016 - - gmx:100812856 709.138