Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi780g00008 ATGACTGGAGCCTTGATAGGCCAAGAGACAGAGAGTGGCTTCATTAGAGGAGCTGCTGTTGGTGCCATATCAGGAGCTGTTTTCTCCATTGAAGTGTTTGAATCTTCTCTTGTTCTTTGGCAATCTGATGAATCTGGAATTAGTTCCCTTAGATTTGACTGTCATTTTCACTGGCAATTTGTGTGGTCTAATCTAATCATTTTGAGTTATGCTATGCAGATTGATGTTCTTGCTAGCCTACTGAGTGGGAGACTTGTGCGTGAAAGGATAGGTCCAGCCATGTTGAGTGCTGTCCAAAGTCAGATGGGAGCTACTGAAATAAGCTTTGATGAAGTTCAGAACATCTTTGACATTGGAGGTGCCAAAGGTTTGTCAAGTGCTTCAGTTGAAAAGATCCCAAAGATCACAATTACAAGTGACAAAAATGTTGATGCATCTGGTGAAAGAGTTTCATGTTCAGTTTGCCTCCAGGACTTTCAGCTTGGAGAGACAGTTAGAAGCTTGCCTCATTGTCATCACATGTTTCACCTACCTTGCATTGACAAGTGGCTCATCAAGCATGGTTCTTGCCCATTATGCAGACGGGATCTGTAA 594 0.4259 MTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWQSDESGISSLRFDCHFHWQFVWSNLIILSYAMQIDVLASLLSGRLVRERIGPAMLSAVQSQMGATEISFDEVQNIFDIGGAKGLSSASVEKIPKITITSDKNVDASGERVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDKWLIKHGSCPLCRRDL 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi780g00008 197 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 1 196 IPR044523 -
Sebi780g00008 197 SUPERFAMILY RING/U-box 135 197 - -
Sebi780g00008 197 ProSiteProfiles Zinc finger RING-type profile. 152 194 IPR001841 -
Sebi780g00008 197 Pfam Ring finger domain 151 194 IPR001841 -
Sebi780g00008 197 CDD RING-H2_NIPL1-like 151 194 - -
Sebi780g00008 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 197 IPR013083 -
Sebi780g00008 197 SMART ring_2 152 193 IPR001841 -
Sebi780g00008 197 FunFam NEP1-interacting protein-like 1 112 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi780g00008 Sebi-Chr780 179040 180427 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi780g00008 1 197 C3H Transcription Factor Family AT5G66070 69.036 1.31e-89 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi780g00008 - - qsa:O6P43_033568 304.293