Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi77g00162 ATGGTTCAATGGAATGATCTGAAACATGTCGGTACTACTAGCATTTTGAACTCGTTAGATATTCCCAAATATCACCAGTTAGTTACAAAAGTGGAAACCCTTGGAGGAGAGATTTCTTTGAGAAACAGAGTAAAAACGAAGGGGAAAATTTGCATTACAAAGATCATCTTCGGGGGTAACAAGGTGGAGGTAAAGATGGAAACAATATCCATCCCTATGGATAGCTCAATGGTGAAACACAAAGGGAAAGGGCAGGTGACAGCCATGGAGGTTTGGGTGTCAATGCAGTTTGTTCAAGCCACCACCATCGTTGGAGCCACCAAACTTGCATTCAGCCATGGAGATGGATGGGTCATCAACTCTGAGTTTAATGGGCCAAGTCCAAATCCCAAAAGAAGGGGAGGAGGTCATGAGGCTGGGAATTACAAAGGAGGAGTTGCTTTTATAGAACTGGATCAGAAATGCACTGAACGACAAGAATATGATAATGAAGATGATGGGCAGCAGCAGTCAGAATCACCATTGCAGTCTTCATCTGCAAATGGAATTTCTGATCCAGGTATTGGTACCCAGAATATTGAATATGCAACACCTGGCCAGCTTGGAACTGGACATCCTATGGTACCACCTGTATATCCATATCCAGATCCTTATTATAGAAGCATCTTTGCTCCCTACGATACACAGCCTTATCCCCCACAATCCTATAGTGGACAGCCAATGGTCCATCTTCAGTTAATGGGAATGCAGCAAGCCGGTGTTCCTCTTCCAACTGATGCAGTTGAGGAGCCTGTATTTGTCAATGCAAAACAATATCATGTCCATAGATTATTTGACTCTCATGCTTCCATGCATCCTAGCATTCCTGCCCCTGTCGGAGGTACTTACTTGTTCTTTAAACAAATCTTGCAGCCATACTTGCATGAATCTCGACATTTGCATGCTCTGAGAAGAGCAAGAGGATGTGGCGGTCGGTTTCTGAATTCAAAGAAAAATGAGAATGAACATGGTGACGTGGCATCACCTGACAAATCACAGTCCACCATCAATCTCAACTCTGATAGAAATGATCTTACTTAA 1080 0.4315 MVQWNDLKHVGTTSILNSLDIPKYHQLVTKVETLGGEISLRNRVKTKGKICITKIIFGGNKVEVKMETISIPMDSSMVKHKGKGQVTAMEVWVSMQFVQATTIVGATKLAFSHGDGWVINSEFNGPSPNPKRRGGGHEAGNYKGGVAFIELDQKCTERQEYDNEDDGQQQSESPLQSSSANGISDPGIGTQNIEYATPGQLGTGHPMVPPVYPYPDPYYRSIFAPYDTQPYPPQSYSGQPMVHLQLMGMQQAGVPLPTDAVEEPVFVNAKQYHVHRLFDSHASMHPSIPAPVGGTYLFFKQILQPYLHESRHLHALRRARGCGGRFLNSKKNENEHGDVASPDKSQSTINLNSDRNDLT 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi77g00162 359 MobiDBLite consensus disorder prediction 122 141 - -
Sebi77g00162 359 ProSiteProfiles NF-YA/HAP2 family profile. 261 329 IPR001289 GO:0003700|GO:0006355
Sebi77g00162 359 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 159 273 IPR001289 GO:0003700|GO:0006355
Sebi77g00162 359 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 304 326 IPR001289 GO:0003700|GO:0006355
Sebi77g00162 359 MobiDBLite consensus disorder prediction 168 198 - -
Sebi77g00162 359 Gene3D - 261 331 - -
Sebi77g00162 359 MobiDBLite consensus disorder prediction 324 359 - -
Sebi77g00162 359 SMART cbf3 260 329 IPR001289 GO:0003700|GO:0006355
Sebi77g00162 359 MobiDBLite consensus disorder prediction 158 202 - -
Sebi77g00162 359 MobiDBLite consensus disorder prediction 341 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi77g00162 Sebi-Chr77 2162235 2166968 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi77g00162 202 345 CCAAT-HAP2 Transcription Factor Family AT1G30500 57.241 2.03e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Sebi77g00162 CBFB_NFYA 2.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi77g00162 K08064 - gmx:100499754 270.011