Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi77g00161 ATGGAGACAATATCCATCCCTATGGATAGCTCAATGGTGAAACACAAAGGGAAAGGGCAGGTGACAGCCATGGAGGTTTGGGTGTCATACAGTTTGTTCAGGCCACCACCATTGTTGGAGCCGCCAAACGGATGGGTCATCAACTCTGAGGGAGGAGGTCTCGAGGCTGGGAATTACAAAGGAGTTGCTTTTATAGCACTGGATCAGAAATGCACTGAACGAAAAGAATATGATAATGATGATGACGGGCAGCAGCAGTCAGAATCACCAATGCAGTCTTCATCTGCAAATGGAATTTCTGATCAAGGTATTGGTACCCAAAATATTGAATATGCAACACCTGGCCAGCTTGGAACTGGGCATCCTATGGTACCACCTGTATATCCATATCCAGATCCTTATTATAGAAGCATCTTTGCTCCCTACGATACACAGTCTTATCCCCCACAATCCTATAGTGGACAGCCAATGGTCCATCTTCAGTTAATGGGAATGCAGCAAGCCGGTGTTCCTCTTCCAACTGATGCAGTTGAGGAGCCTGTATTTGTCAATGCAAAACAATATCACGGTATATTAAGACGTAGACAATCTCGTGCCAAAGCTGAATCAGAAAATAAAGTTATAAGGAATCGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCTCTGAGAAGAGCAAGAGGATGTGGCGGTCGGTTTCTGAATGCAAAGAAAAATGAGAATCAACATGGTGATGTGGCATCACCTGACAAATCACAGTCCACCATCAATCTCAACTCTGATAGAAATGATCTTACTTCATCAGATAGGACATCCTGA 822 0.4404 METISIPMDSSMVKHKGKGQVTAMEVWVSYSLFRPPPLLEPPNGWVINSEGGGLEAGNYKGVAFIALDQKCTERKEYDNDDDGQQQSESPMQSSSANGISDQGIGTQNIEYATPGQLGTGHPMVPPVYPYPDPYYRSIFAPYDTQSYPPQSYSGQPMVHLQLMGMQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVIRNRKPYLHESRHLHALRRARGCGGRFLNAKKNENQHGDVASPDKSQSTINLNSDRNDLTSSDRTS 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi77g00161 273 SMART cbf3 176 237 IPR001289 GO:0003700|GO:0006355
Sebi77g00161 273 MobiDBLite consensus disorder prediction 235 273 - -
Sebi77g00161 273 ProSiteProfiles NF-YA/HAP2 family profile. 177 237 IPR001289 GO:0003700|GO:0006355
Sebi77g00161 273 PRINTS CCAAT-binding transcription factor subunit B signature 180 202 IPR001289 GO:0003700|GO:0006355
Sebi77g00161 273 PRINTS CCAAT-binding transcription factor subunit B signature 211 234 IPR001289 GO:0003700|GO:0006355
Sebi77g00161 273 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 179 234 IPR001289 GO:0003700|GO:0006355
Sebi77g00161 273 ProSitePatterns NF-YA/HAP2 subunit signature. 182 202 IPR018362 GO:0003677|GO:0016602
Sebi77g00161 273 Gene3D - 177 238 - -
Sebi77g00161 273 MobiDBLite consensus disorder prediction 75 103 - -
Sebi77g00161 273 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 75 271 IPR001289 GO:0003700|GO:0006355
Sebi77g00161 273 MobiDBLite consensus disorder prediction 247 267 - -
Sebi77g00161 273 MobiDBLite consensus disorder prediction 84 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi77g00161 Sebi-Chr77 2149799 2153989 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi77g00161 82 273 CCAAT-HAP2 Transcription Factor Family AT1G30500 58.333 1.03e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Sebi77g00161 CBFB_NFYA 6.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi77g00161 K08064 - gmx:100499754 337.035