LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi77g00154	ATGGATTCTCCGAAAGAGGAAATTGAGGGAACATCAACATGGGCAGCAAAAAATAAAGAGAATTTTTCACACGAAGAGGAGGTGTTGCGTTTGATTGGTATAAGGGATTTTATCAGCCTCTTGTTGACTTATCCAGTCAAATTAGAAGAGGAAGGCATATTAAAAGCATGGATTAATGCATTTAAGACCCAATGGAGACCCCAATTACTCACAACTGATGATGTGAATGAGACAGACAAACCATGGCATGTACTGACTGTGAAGGCACTAAAATGTATGGAAGGGTTTATGCCAATGGAAATAATAAGTCAAATTGAACATAGTGGGAGGCCTATCTTCTACCGTCATAATGATGTACCAAGAGCCATTCTCGATTTAACTATTGATCTTGCAGTTGAGCAACTGATTCAAACTTTGTTTTCTATAGATGATTATGCATGCTATGTGAGGCTCACAACCAGAGACAGTGTTGAAAAAAGATGTGTGGTGAACAAAATAACAGCAGCCTTGGAAGAAGACAAGCACAACAGCCTGTTTGGAATTGATAAAGGTTTTCTTAGAGCCCTATGGATCGATGCCTCTGTACATGAGAGTGATGCAGAGGTTCGAGTTCAAGAACAAATCAATTCCATGATGGCACAGGATGTTGAGGAAGAGATGAAAAGCAACAGATATTTGGTGATTCTATTGGATAGAGATGGTAACAAAAGGTTGGACCCCACAAAAGTGCATTTCCCTGTGGGAACTGTGGTTTTGATAACAACTGAAACTGAACTATCAGCACAGGCACGGGAGGGTGATGATGAATTTGCAATTACATGCATAATGAATTTGAATATCACGACCCAGGATCATCTCTTGTCTTGGGAACTCTTCTGTAGCTATATGGTAAATAACATGGCACATTTATCAAGGGGCATTCAGAGCATTGCGGAGCAAATAGTAAAGGAATGTCATGGCCATCTTCTTGCCATTGTCCTTGTGGCAAAGTTTCTGAAGAATGTGTGGGATGTTAAACAATGGGAACTTGCGCTTGAAAAATTAAGGTTCACGAATCCTTCCTATGATTATCATGAGAGTGATCAAAGAGGCATTAACAGAGCAATGGTCAATGCATTCCTAAATATAATTTGGGAAGGCATCGAAAAGACACAAAATCTTTGCCTTGAACTCAGTTTGTTTGTTCACAATATTAAAACTGGGGTGTCACTTGAGACCTTGATGTCTAATTGGGTTAGTGTTGAATTATCACACAAACATGAAGTGGCACAACGTCTCTTCCCATTTGATTATGGTGATATTAGACTAAATTACACAATGGAAGAAGCATGCTATGACATCAATGTACTTATAGGTCATTCTATCTTGTTCGAAAGTGGAAGTGGTTATGTTCGTTTGCCGATAGAAACTTATGACATAATAGAATCCATACACAAATTGAATCCTAGCATCATAAGGGGTGGTGCATTAGGATTGACAGAGCCACCACATATTGGACGATGGCATGGTCTTATTCGAATTGAATTGATGGACAATGAAATATATGAGCTACCACAATCACCAGAATGCCCCAAGCTCAAAGTGTTGCTATTGCAACGAAATGCTGATTTGATGGATATTCCAACCTCATTTTTTGACCACATGCCTCTGCTCCAATACTTAGACTTATCCCACACCAGTATAAGGGATTTGCCCCCTTCTATCTCCAAGTTGAAAGAACTTAAGAAATTTTTTCTTAGAGGTTGTGATCTCTTTATGGAACTACCACTAGAAATTGGACATCTGAAGAATCTTGAAGAGCTTGATCTTGATGGGACTTTGATCACACATCTGCCAGAGGAGATCCGAGAATTGATCAACCTAAAAAGCTTGATCCTCTGCTTTGAAGGATATTATCATGCACTTGGTCATGGCAAAGAAGGCAAGCAAATTTCCAACTCAACAATTATTCCTCCAAAAGTGATATCAAATCTTACTCAACTGAATTATTTAAGCATCAATGTTGATCCTGATGATGAGAGATGGAATGAGGATGTGTTTAATATTTTGTTGGAAATCTTAGGATTAGAAAGGTTGAAGAGGGAGCTTATCATAGAAGACTGTCCAAAAGTAACCACCCTTATAAGTCATGACTCATCAGAACATGAGACGCCTATTTACCTCCCTAGCTTGAAAAAGATTACACTTGCCTATCTACCAGAACTGGTTAGCATTTTCAATGGCTTGCATGTTGAAAATGGCTTAAGAAAAGTGGGATTTTATTATTGCCCAAAACTCCAAAGTCTTTCAAAATCGGAGTTGTCAAGCAAATATCTGAGGGTCATCAAAGGAGAAAGTAAGTGGTGGGAAGCATTAAAATGGAATGAAGCAGAGTGGGGATGTGCAAATAGACCCGATTTTCTCAATCGAATTTTTTCCCCAGTCAATGAGGAGGCTGACATAATGACCCAACTAGCTACATATCACAATGATGACAAGCTTGTATCCTCGTTTGAAAATGCACTTGAAACGGTAAACTGGAATGAAGCAGCGGGTGAGCCATCACATTCACAACCGTCCTCAGGGATTACATTCCAAATGTCAGAGTTACTGTTTCATGAAGAGCCTGGTAGAGATTTAAGGGATGAGAAGCAGATTGTTTCCAGAAAGAATACAAACACTTTGCCAAAATGGACAGAACACATTCGGGTTTCACCACCAGGAATGGGAATGGAGGTTCCTCCCGATGATGGATATAGTTGGAGAAAATATGGCCAGAAAGACATTCTTGGAAGCAAGTATCCAAGAGGCTATTACAGATGCACCCACAGAAATCTATATGGCTGCTGGGCCAAAAAGCAAATGCAAAGATCTGATGAAGACCCCACAATCTTCAAAATCACTTACCAAGGAAAGCACACTTGCAATGTGGTGCTTCCTACATCAAGTCAACAAGAAGAAGAACAAGAATCAATTTTGAAAACACATTCTCAGCAGCAGGAGAAGAAGAATGTCCTGCAAAGCCTTGAGGAGCAACCAAACGACCAACCATTGAACCTCTGGGCAGGCCTGAAAGTCCAAACAGAGAACCCAGATTGTGTATATGATGAAAGATATTAG	3099	0.3972	MDSPKEEIEGTSTWAAKNKENFSHEEEVLRLIGIRDFISLLLTYPVKLEEEGILKAWINAFKTQWRPQLLTTDDVNETDKPWHVLTVKALKCMEGFMPMEIISQIEHSGRPIFYRHNDVPRAILDLTIDLAVEQLIQTLFSIDDYACYVRLTTRDSVEKRCVVNKITAALEEDKHNSLFGIDKGFLRALWIDASVHESDAEVRVQEQINSMMAQDVEEEMKSNRYLVILLDRDGNKRLDPTKVHFPVGTVVLITTETELSAQAREGDDEFAITCIMNLNITTQDHLLSWELFCSYMVNNMAHLSRGIQSIAEQIVKECHGHLLAIVLVAKFLKNVWDVKQWELALEKLRFTNPSYDYHESDQRGINRAMVNAFLNIIWEGIEKTQNLCLELSLFVHNIKTGVSLETLMSNWVSVELSHKHEVAQRLFPFDYGDIRLNYTMEEACYDINVLIGHSILFESGSGYVRLPIETYDIIESIHKLNPSIIRGGALGLTEPPHIGRWHGLIRIELMDNEIYELPQSPECPKLKVLLLQRNADLMDIPTSFFDHMPLLQYLDLSHTSIRDLPPSISKLKELKKFFLRGCDLFMELPLEIGHLKNLEELDLDGTLITHLPEEIRELINLKSLILCFEGYYHALGHGKEGKQISNSTIIPPKVISNLTQLNYLSINVDPDDERWNEDVFNILLEILGLERLKRELIIEDCPKVTTLISHDSSEHETPIYLPSLKKITLAYLPELVSIFNGLHVENGLRKVGFYYCPKLQSLSKSELSSKYLRVIKGESKWWEALKWNEAEWGCANRPDFLNRIFSPVNEEADIMTQLATYHNDDKLVSSFENALETVNWNEAAGEPSHSQPSSGITFQMSELLFHEEPGRDLRDEKQIVSRKNTNTLPKWTEHIRVSPPGMGMEVPPDDGYSWRKYGQKDILGSKYPRGYYRCTHRNLYGCWAKKQMQRSDEDPTIFKITYQGKHTCNVVLPTSSQQEEEQESILKTHSQQQEKKNVLQSLEEQPNDQPLNLWAGLKVQTENPDCVYDERY	1032

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi77g00154	1032	ProSiteProfiles	WRKY domain profile.	909	971	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Sebi77g00154	1032	SMART	LRR_typ_2	548	571	IPR003591	-
	Sebi77g00154	1032	SMART	LRR_typ_2	595	618	IPR003591	-
	Sebi77g00154	1032	Pfam	Leucine rich repeat	524	584	IPR001611	GO:0005515
	Sebi77g00154	1032	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	189	352	IPR027417	-
	Sebi77g00154	1032	Gene3D	-	285	361	IPR042197	-
	Sebi77g00154	1032	Gene3D	Ribonuclease Inhibitor	477	786	IPR032675	-
	Sebi77g00154	1032	SUPERFAMILY	WRKY DNA-binding domain	906	969	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Sebi77g00154	1032	Gene3D	WRKY domain	902	971	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Sebi77g00154	1032	SMART	WRKY_cls	908	970	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Sebi77g00154	1032	Pfam	NB-ARC domain	196	349	IPR002182	GO:0043531
	Sebi77g00154	1032	Pfam	WRKY DNA -binding domain	909	969	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Sebi77g00154	1032	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	837	1007	IPR044810	GO:0003700
	Sebi77g00154	1032	MobiDBLite	consensus disorder prediction	975	1003	-	-
	Sebi77g00154	1032	FunFam	WRKY transcription factor 53	893	971	-	-
	Sebi77g00154	1032	SUPERFAMILY	L domain-like	493	763	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi77g00154	Sebi-Chr77	2052329	2056665	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi77g00154	872	991	WRKY Transcription Factor Family	AT4G11070	51.667	2.82e-36	137

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Sebi77g00154		NB-ARC	6e-10	CL0023

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi77g00154	-		-	gmx:102668266	789.645