Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi77g00138 ATGGGAATTCAGGGTCTATTACCGCAATTGAAATCGATCATGGTTCCATTTCACATCAAGGATTTGAATGGCTGTTCTGTGGCGGTAGACACTTATTCTTGGCTCCACAAAGGTGCCTTGTCTTGCAGCACTGAGCTCTGCAAAGGGATGCCCACTTCCAGGCACATTGAGTATTGCATGCACAGAGTAAATTTGCTGCGCCACTATGGTGTTAAGCCCATTCTTGTATTTGATGGAGGTCTTCTACCGATGAAGAGTGAACAAGAGAACAAGCGTGCCAGGGTTAGAAAGGATAATTTTGCACGTGCAGTTGAGCATGAGTCAGATGGAAATTCTGCGGCTGCATATGAGTGCTACCAGAAAGCTGTTGATATTTCACCTCTGATTGCACGTGAACTAATTCAGGTATTAAAGCAGGAGAATGTGCAGTACATTGTTGCTCCTTACGAGGCAGATGCCCAGATGACATTCTTGGCAATTAGCAGACAGGTTGATGCAGTTATAACTGAAGACTCTGATCTTATACCATTTGGTTGCCCAAGAATTATCTTTAAAATGGACAAGTTTGGTCAAGGTGTTCAGTTTCAGTATTCCATGCTACAAAAGAATAAGGAGCTTAGTTTTGAAGGGTTCAACAGACAAATGCTTCTTGAAATGTGTATTTTGAGTGGCTGTGACTATCTTCAGTCCTTGCCAGGTATGGGTCTCAAAAAGGCCCATGCAAGCATTAAAAGATTTAAAAGTTATGACAAGGTTCTTAAGCACTTGAGATACAATGGAGTTTCTGTGCCTCCCTTTTATGAAGAGTCATTCAGGAAGGCTATTCTTACTTTCCAATACCAACGGGGAGAGAATCTTATTCCCAGATTGGCAATTGCAGGCACTTGTCAATTCAAAACCATTCATTCTGAAAGTGTGAAGAAAAAAATTGATTTGCCCGTGCAGAAGAATCTCTTGACCAAGTATTTTTGTTTTGCATCTCTTGAAGCAAAAAGGAAATTCAGAGCTCCTCGGATATCACCTACTACTACCAATCAAAGTACATTGGATTCCTCTTCTGTCAGTTCCCTTGAACATGAGACTTTAGAAGCTGCTGCCAGTGAAACAAAGAATTCAGCTGCATCCATAGTTGACTCTGAGAATTGGTGCAGTGGCCCTCTTCCTAATAACCATATTGAAAACAGTTTTACCACCAAAGTTTCCGAGTTTATGCAATCTCCATGTCATGTATCTATGGTGGGTGAAAAGAAGAAAAGTCCTGAACATACAATACTGCGACAACCCAGGCAGCCAATTCATAAACCTTGTCTAGGGTTGCTTAAGGAGCATGAGCTCACAAATGTCCAAGACACAGTTGAAGGAAAAACCAGGGAGGCAACAAAAAAGGTAATTGTAAGGAGTGCTTATTTTCAGCATAAGCAAGTAGAGAAGAATGTTTGTGGTGAGAAACAAGATTGCCTGTCCTCTGGCATTGTCATTGATGAGAGAAAAAATGCCATATCTGACAGTGATTTATGTAACAACCATTTGAAGAATAAAGACTTGAAAAGGAAGATCTCCCCTAATGACCACATCCAGAGCGAAAATTTGCGGCCCAGGCTAATACGTCCTGCTTCACCTCCTCATAATAATGGTTTCTGTGATGACAATGTTACTGGACCATTTGCAGAGAATAATGCTGAAGAAAAATTTGGGACAAATATTTCCCATCTAGGCCATTATTCGAAAATAGCTGAGAAGTCTTTGGAAAGATTTGAATCTGTGATATCATCCTTTAGATGCTCTTCTGGCTCTCGTGTCAGTGGTCTCCGTGCTCCTCTGAAAGATGTTCGGAACATTTGTAATAATAGGCCTAAAACTGTGGACTTCAAGCAATATGCGTATGTGCCAAAACAAACAAAGACTAGCAGAACAGCTCCTGGGAATTAA 1929 0.4106 MGIQGLLPQLKSIMVPFHIKDLNGCSVAVDTYSWLHKGALSCSTELCKGMPTSRHIEYCMHRVNLLRHYGVKPILVFDGGLLPMKSEQENKRARVRKDNFARAVEHESDGNSAAAYECYQKAVDISPLIARELIQVLKQENVQYIVAPYEADAQMTFLAISRQVDAVITEDSDLIPFGCPRIIFKMDKFGQGVQFQYSMLQKNKELSFEGFNRQMLLEMCILSGCDYLQSLPGMGLKKAHASIKRFKSYDKVLKHLRYNGVSVPPFYEESFRKAILTFQYQRGENLIPRLAIAGTCQFKTIHSESVKKKIDLPVQKNLLTKYFCFASLEAKRKFRAPRISPTTTNQSTLDSSSVSSLEHETLEAAASETKNSAASIVDSENWCSGPLPNNHIENSFTTKVSEFMQSPCHVSMVGEKKKSPEHTILRQPRQPIHKPCLGLLKEHELTNVQDTVEGKTREATKKVIVRSAYFQHKQVEKNVCGEKQDCLSSGIVIDERKNAISDSDLCNNHLKNKDLKRKISPNDHIQSENLRPRLIRPASPPHNNGFCDDNVTGPFAENNAEEKFGTNISHLGHYSKIAEKSLERFESVISSFRCSSGSRVSGLRAPLKDVRNICNNRPKTVDFKQYAYVPKQTKTSRTAPGN 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi77g00138 642 ProSitePatterns XPG protein signature 1. 71 85 IPR019974 GO:0016788
Sebi77g00138 642 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 414 IPR006084 -
Sebi77g00138 642 FunFam Exonuclease 1, putative 1 207 - -
Sebi77g00138 642 SMART xpgineu 138 208 IPR006086 GO:0004518
Sebi77g00138 642 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Sebi77g00138 642 CDD H3TH_EXO1 214 282 IPR037315 GO:0003677|GO:0035312
Sebi77g00138 642 FunFam exonuclease 1 209 281 - -
Sebi77g00138 642 SMART xpgn3 1 99 IPR006085 GO:0004518
Sebi77g00138 642 Gene3D - 209 281 - -
Sebi77g00138 642 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
Sebi77g00138 642 MobiDBLite consensus disorder prediction 339 359 - -
Sebi77g00138 642 Pfam XPG I-region 141 226 IPR006086 GO:0004518
Sebi77g00138 642 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Sebi77g00138 642 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Sebi77g00138 642 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Sebi77g00138 642 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Sebi77g00138 642 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Sebi77g00138 642 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 295 IPR036279 -
Sebi77g00138 642 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Sebi77g00138 642 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Sebi77g00138 642 Gene3D - 1 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi77g00138 Sebi-Chr77 1848459 1854393 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi77g00138 1 264 Core DNA Replication Machinery Family AT5G26680 25.993 3.27e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi77g00138 K10746 - gmx:100798062 849.351