Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi77g00133 ATGTCATCAGCTTCTCCTCAGAGAAAGATGGGAAGGGGGAAGATTGAGATCAAGAGGATTGAGAACACAACCAATCGCCAAGTTACCTTCTGCAAACGTAGAAATGGGTTGCTCAAGAAAGCATATGAGTTGTCTGTGCTTTGTGATGCAGAAGTTGCTCTTGTAGTCTTCTCAAGCCGTGGCCGTCTCTATGAATATGCAAATAACAGTTAA 213 0.4319 MSSASPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNS 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi77g00133 70 PANTHER SERUM RESPONSE FACTOR HOMOLOG 10 70 - -
Sebi77g00133 70 PRINTS MADS domain signature 47 68 IPR002100 GO:0003677|GO:0046983
Sebi77g00133 70 PRINTS MADS domain signature 12 32 IPR002100 GO:0003677|GO:0046983
Sebi77g00133 70 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677|GO:0046983
Sebi77g00133 70 ProSitePatterns MADS-box domain signature. 12 66 IPR002100 GO:0003677|GO:0046983
Sebi77g00133 70 SMART madsneu2 10 69 IPR002100 GO:0003677|GO:0046983
Sebi77g00133 70 Gene3D - 22 70 IPR036879 GO:0003677|GO:0046983
Sebi77g00133 70 FunFam MADS-box transcription factor 21 22 70 - -
Sebi77g00133 70 CDD MADS_MEF2_like 11 70 IPR033896 GO:0000977|GO:0045944
Sebi77g00133 70 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 66 IPR002100 GO:0003677|GO:0046983
Sebi77g00133 70 ProSiteProfiles MADS-box domain profile. 10 70 IPR002100 GO:0003677|GO:0046983
Sebi77g00133 70 SUPERFAMILY SRF-like 11 70 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi77g00133 Sebi-Chr77 1778054 1778426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi77g00133 4 70 MADS-box Gene Family AT2G42830 89.552 1.40e-39 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi77g00133 SRF-TF 1.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi77g00133 K09264 - jre:109015257 135.576