Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi77g00123 ATGGATGAGGATTCAGCAAGAAATGGAACCCATGAAGTAGCTTTAGATGTAAACAAGGATGTCTCAAAAACAAGTGAAGACTCAGGCATCTATGTCTCTGTTTCTTTCTTGCAGAAGTTGGTAGCTGAAGTGGTGGGCACATATTTCTTGATATTTGCTGGCTGTGCTTCAGTGGTGGTGAACAAGAACAATGATAATGTAGTGACACTTCCTGGGATTTCAATTGTTTGGGGACTGGTTGTGATGGTGCTTGTTTACTCTGTTGGTCACATCTCTGGTGCCCATTTCAATCCTGCTGTCACCATAGCTTTTGCCACCATCAAAAGGTTTCCTTGGAAGCAGGTACCAGCTTATGTGGCAGCTCAAGTCCTTGGATCCACACTTGCAAGTGGAACTCTGAGACTAATATTTAGTGGCAAGCATGACCAGTTTTCAGGAACACTCCCAGCTGGTTCTAACCTGCAAGCTTTTTTCATTGAATTCATAATCACTTTTTACCTTACTTTCATCATATCCGGGGTTGCAACCGATAATAGAGCGATTGGTGAGTTGGCTGGGATTGCCGTTGGGTCTACTGTACTGTTGAACGTGATGTTTGCAGGGCCCATCACAGGAGCATCAATGAACCCAGCAAGAAGCATAGGGCCTGCATTTGTACACCATGAATATAGAGGAATTTGGGTATATTTGGTATCTCCAATTCTGGGTGCTGTGGCTGGTGCATGGGTCTATAACATCATTCGATACACAGATAGGCCTGTCCGTGAAATAACCCAAAGTGCCTCTTTCCTCAAAGGAGCAGGCCGTAGTGGTGGCTCAAGGTGA 825 0.4485 MDEDSARNGTHEVALDVNKDVSKTSEDSGIYVSVSFLQKLVAEVVGTYFLIFAGCASVVVNKNNDNVVTLPGISIVWGLVVMVLVYSVGHISGAHFNPAVTIAFATIKRFPWKQVPAYVAAQVLGSTLASGTLRLIFSGKHDQFSGTLPAGSNLQAFFIEFIITFYLTFIISGVATDNRAIGELAGIAVGSTVLLNVMFAGPITGASMNPARSIGPAFVHHEYRGIWVYLVSPILGAVAGAWVYNIIRYTDRPVREITQSASFLKGAGRSGGSR 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi77g00123 274 PANTHER AQUAPORIN NIP2-1 26 263 IPR034294 -
Sebi77g00123 274 FunFam Aquaporin NIP1-1 2 257 - -
Sebi77g00123 274 NCBIfam MIP family channel protein 42 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi77g00123 274 Gene3D Glycerol uptake facilitator protein. 3 260 IPR023271 -
Sebi77g00123 274 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi77g00123 274 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi77g00123 274 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi77g00123 274 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi77g00123 274 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi77g00123 274 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi77g00123 274 CDD MIP 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi77g00123 274 Pfam Major intrinsic protein 33 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi77g00123 274 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Sebi77g00123 274 SUPERFAMILY Aquaporin-like 32 258 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi77g00123 Sebi-Chr77 1664553 1666870 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi77g00123 34 270 Major Intrinsic Protein MIP AT5G37810 60.338 4.72e-105 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi77g00123 K09874 - gmx:100794883 454.136