Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi77g00119 ATGGATGAAGCACAGGGCAGTTCAAGTTCCTTGCCTCCTTTCCTGGCAAAGACTTATGAAATGGTGGATGATCCTTCCACGGATCCGATTGTTTCCTGGAGTGTCAATAACAGAAGTTTCATTGTATGGAATCCCCCAGATTTTGCAAGGGATTTGCTTCCTAGATTCTTTAAGCACAATAACTTCTCAAGTTTTATCAGGCAGCTGAACACATATGGATTTAGGAAAGTTGACCCTGAACAATGGGAATTTGCCAATGATGATTTTGTAAGGGGGCAACCACATCTTATGAAGAATATCCATAGACGGAAGCCAGTTCATAGCCATTCTTTACAGAATCTTCAAGCACAAGCCCCTCTAGCTGAGTCAGAGAAGCAGAGTTTAAATGATGAAATTAAGAAGCTTAAGCATGATAAAGAACGACTCCTTATGGAGTTACAGAGACATCAACATGAGTGGCAAACATATGAGATACAAATACATTGTTCAAAAGATCGGTTGGAGAAGTTGGAACAGAAGCAACAAAAGATGGTCTCTTCTGTTTCTCAAGTATTGCACAAACCTGTGCTTGCTGTAAATCTCTTGCCACTGACAGAAACCATGGATAGAAAAAGGAGGTTGCCAAGAAGTGGCTACTTTAATGATGAAGCTAGCAATGAAGATGCTATTGAAACTTCACAGATGTTACCCACAGAAAATGCAGAGGGTGCCTCTGTTTTGACATCAAACATGGAGAGATTGGACCAGCTTGAGTCATCCATGGTATTTTGGGAGACTATTGCACAAGAAATTGGTGACACCTTCACTCATATTAACTCAAACATGGATTTTGATGAATCTACCAGTTGTGCTGATAGTCTGTCTATATCTTGTGCGCAACTAGATGTTGAAGTTCGGCCTAAGTCACCTGGAATTGACATGAACTCTGAGCCAGCTGCAGCTGCTGCTCCTGAGCCTGTTGCATCCAAAGAACAACCTGCAGGAACCGTCACTGCAGCAACTGGTGTTAATGATGTGTTCTGGGAACAATTCTTGACAGAGGATCCTGGTGCATCTGAAGCACAGGAAGTGCAGTCAGAGAGAAAGGATTATAATGGCAGAAAAAATGAAGGAAAACCTAGTGACCATGGCAGATTTTGGTGGAATATGCGGAATGCAAATAATCTTTCAGAACAAATGGGGCATGTTGATCAAGTAGAGAAAACTTAG 1209 0.4169 MDEAQGSSSSLPPFLAKTYEMVDDPSTDPIVSWSVNNRSFIVWNPPDFARDLLPRFFKHNNFSSFIRQLNTYGFRKVDPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLQNLQAQAPLAESEKQSLNDEIKKLKHDKERLLMELQRHQHEWQTYEIQIHCSKDRLEKLEQKQQKMVSSVSQVLHKPVLAVNLLPLTETMDRKRRLPRSGYFNDEASNEDAIETSQMLPTENAEGASVLTSNMERLDQLESSMVFWETIAQEIGDTFTHINSNMDFDESTSCADSLSISCAQLDVEVRPKSPGIDMNSEPAAAAAPEPVASKEQPAGTVTAATGVNDVFWEQFLTEDPGASEAQEVQSERKDYNGRKNEGKPSDHGRFWWNMRNANNLSEQMGHVDQVEKT 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi77g00119 402 Gene3D - 6 104 IPR036388 -
Sebi77g00119 402 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
Sebi77g00119 402 Coils Coil 111 152 - -
Sebi77g00119 402 MobiDBLite consensus disorder prediction 354 377 - -
Sebi77g00119 402 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi77g00119 402 MobiDBLite consensus disorder prediction 347 380 - -
Sebi77g00119 402 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi77g00119 402 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi77g00119 402 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi77g00119 402 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 300 IPR027725 -
Sebi77g00119 402 MobiDBLite consensus disorder prediction 301 325 - -
Sebi77g00119 402 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi77g00119 402 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi77g00119 402 SUPERFAMILY Tropomyosin 98 178 - -
Sebi77g00119 402 FunFam Heat shock transcription factor 1 7 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi77g00119 Sebi-Chr77 1612300 1613609 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi77g00119 7 402 HSF AT4G18880 52.567 4.61e-125 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sebi77g00119 HSF_DNA-bind 6.1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi77g00119 K09419 - gmx:100798004 696.041