Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi77g00117 ATGGATGAAGCACAGGGCAGTTCAAGTTCCTTGCCTCCTTTCCTGGCAAAGACTTATGAAATGGTGGATGATCCTTCCACGGATCCGATTGTTTCCTGGAGTGTCAATAACAGAAGTTTCATTGTATGGAATCCCCCAGATTTTGCAAGGGATTTGCTTCCTAGATTCTTTAAGCACAATAACTTCTCAAGTTTTATCAGGCAGCTGAACACATATGGATTTAGGAAAGTTGACCCTGAACAATGGGAATTTGCCAATGATGATTTTGTAAGGGGGCAACCACATCTTATGAAGAATATCCATAGACGGAAGCCAGTTCATAGCCATTCTTTACAGAATCTTCAAGCACAAGCCCCTCTAGCTGAGTCAGAGAAGCAGAGTTTAAATGATGAAATTAAGAAGCTTAAGCATGATAAAGAACGACTCCTTATGGAGTTACAGAGACATCAACATGAGTGGCAAACATATGAGATACAAATACATTGTTCAAAAGATCGGTTGGAGAAGTTGGAAACAGAAGCAACAAAAGATGAAACCATGGATAGAAAAAGGAGGTTGCCAAGAAGTGGCTACTTTAATGATGAAGCTAGCAATGAAGATGCTATTGAAACTTCACAGATGTTACCCACAGAAAATGCAGAGGGTGCCTCTGTTTTGACATCAAACATGGAGAGATTGGACCAGCTTGAGTCATCCATGGTATTTTGGGAGACTATTGCACAAGAAATTGGTGACACCTTCACTCATATTAACTCAAACATGGATTTTGATGAATCTACCAGTTGTGCTGATAGTCTGTCTATATCTTGTGCGCAACTAGATGTTGAAGTTCGGCCTAAGTCACCTGGAATTGACATGAACTCTGAGCCAGCTGCAGCTGCTGCTCCTGAGCCTGTTGCATCCAAAGAACAACCTGCAGGAACTGTCACTGCAGCAACTGGTGTTAATGATGTGTTCTGGGAACAATTCTTGACAGAGGATCCTGGTGCATCTGAAGCACAGGAAGTGCAGTCAGAGAGAAAGGATTATAATGGCAGAAAAAATGAAGGAAAACCTAGGGACCACGGCAGATTTTGGTGGAATATGCGGAATGCAAATAATCTTTCAGAACAAATGGGGCATGTTGGTCAAGTAGAGAAAACTTAG 1146 0.4171 MDEAQGSSSSLPPFLAKTYEMVDDPSTDPIVSWSVNNRSFIVWNPPDFARDLLPRFFKHNNFSSFIRQLNTYGFRKVDPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLQNLQAQAPLAESEKQSLNDEIKKLKHDKERLLMELQRHQHEWQTYEIQIHCSKDRLEKLETEATKDETMDRKRRLPRSGYFNDEASNEDAIETSQMLPTENAEGASVLTSNMERLDQLESSMVFWETIAQEIGDTFTHINSNMDFDESTSCADSLSISCAQLDVEVRPKSPGIDMNSEPAAAAAPEPVASKEQPAGTVTAATGVNDVFWEQFLTEDPGASEAQEVQSERKDYNGRKNEGKPRDHGRFWWNMRNANNLSEQMGHVGQVEKT 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi77g00117 381 MobiDBLite consensus disorder prediction 281 304 - -
Sebi77g00117 381 MobiDBLite consensus disorder prediction 333 358 - -
Sebi77g00117 381 Coils Coil 111 152 - -
Sebi77g00117 381 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi77g00117 381 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi77g00117 381 FunFam Heat shock transcription factor 1 7 104 - -
Sebi77g00117 381 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 224 IPR027725 -
Sebi77g00117 381 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi77g00117 381 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi77g00117 381 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi77g00117 381 MobiDBLite consensus disorder prediction 326 358 - -
Sebi77g00117 381 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
Sebi77g00117 381 Gene3D - 6 104 IPR036388 -
Sebi77g00117 381 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi77g00117 381 SUPERFAMILY Tropomyosin 98 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi77g00117 Sebi-Chr77 1579482 1580792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi77g00117 7 381 HSF AT4G18880 48.900 7.77e-110 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sebi77g00117 HSF_DNA-bind 5.5e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi77g00117 K09419 - gmx:100798004 649.818